Hb_001040_050

Information

Type -
Description -
Location Contig1040: 124984-126092
Sequence    

Annotation

kegg
ID rcu:RCOM_0935920
description Stem-specific protein TSJT1, putative
nr
ID XP_002519037.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RZ68
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0935920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01457: 124884-126090
cDNA
(Sanger)
(ID:Location)		 023_G04.ab1: 125205-126105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_050 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_002447_060 0.0843118547 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
3 Hb_000115_190 0.0870484705 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
4 Hb_006519_020 0.0927545407 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_002079_100 0.1004204261 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
6 Hb_012633_010 0.1068863986 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
7 Hb_000347_160 0.1100131772 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
8 Hb_007632_200 0.112720323 - - hypothetical protein L484_018221 [Morus notabilis]
9 Hb_000157_060 0.1144733255 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
10 Hb_004007_080 0.1195094352 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
11 Hb_028187_010 0.1200973254 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
12 Hb_001143_200 0.1267547542 transcription factor TF Family: NAC NAC domain protein [Glycine max]
13 Hb_000731_030 0.1291838758 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000816_080 0.1306128632 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
15 Hb_005649_050 0.1321686995 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002078_310 0.1336859222 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
17 Hb_074660_010 0.1344763098 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_001433_120 0.1346025147 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
19 Hb_000505_030 0.1346054541 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001606_040 0.1348021499 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001040_050 Hb_001040_050 Hb_002447_060 Hb_002447_060 Hb_001040_050--Hb_002447_060 Hb_000115_190 Hb_000115_190 Hb_001040_050--Hb_000115_190 Hb_006519_020 Hb_006519_020 Hb_001040_050--Hb_006519_020 Hb_002079_100 Hb_002079_100 Hb_001040_050--Hb_002079_100 Hb_012633_010 Hb_012633_010 Hb_001040_050--Hb_012633_010 Hb_000347_160 Hb_000347_160 Hb_001040_050--Hb_000347_160 Hb_002447_060--Hb_002079_100 Hb_002447_060--Hb_012633_010 Hb_000157_060 Hb_000157_060 Hb_002447_060--Hb_000157_060 Hb_028187_010 Hb_028187_010 Hb_002447_060--Hb_028187_010 Hb_000505_030 Hb_000505_030 Hb_002447_060--Hb_000505_030 Hb_000028_250 Hb_000028_250 Hb_000115_190--Hb_000028_250 Hb_000115_190--Hb_006519_020 Hb_000115_190--Hb_002447_060 Hb_000388_040 Hb_000388_040 Hb_000115_190--Hb_000388_040 Hb_005162_120 Hb_005162_120 Hb_000115_190--Hb_005162_120 Hb_022406_010 Hb_022406_010 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_007681_020 Hb_007681_020 Hb_006519_020--Hb_007681_020 Hb_169753_010 Hb_169753_010 Hb_006519_020--Hb_169753_010 Hb_002079_100--Hb_000505_030 Hb_007558_060 Hb_007558_060 Hb_002079_100--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_002079_100--Hb_000731_030 Hb_002079_100--Hb_012633_010 Hb_000816_080 Hb_000816_080 Hb_002079_100--Hb_000816_080 Hb_012633_010--Hb_006519_020 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_087793_010 Hb_087793_010 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_114292_010 Hb_114292_010 Hb_000347_160--Hb_114292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.431281 73.3318 1441.12 183.065 0.271011 0.304247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6015 11.7906 2.84922 17.8838 53.6373

CAGE analysis