Hb_163140_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig163140: 3103-4173
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14130g
description POPTRDRAFT_574574; hypothetical protein
nr
ID XP_012087685.1
description PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JXL7
description MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163140_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
2 Hb_007681_020 0.0773634733 - - transferase, putative [Ricinus communis]
3 Hb_028187_010 0.1055558537 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
4 Hb_149985_030 0.1118303456 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
5 Hb_012633_010 0.1147850802 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
6 Hb_006519_020 0.114890029 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000349_170 0.1157320094 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
8 Hb_002447_060 0.1184363215 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
9 Hb_003935_050 0.1205498466 - - protein with unknown function [Ricinus communis]
10 Hb_022406_010 0.1226345713 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_003767_030 0.1284661826 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
12 Hb_001606_040 0.1308067594 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_001153_230 0.1325663959 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
14 Hb_001913_070 0.1356750778 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
15 Hb_009421_090 0.1387144396 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
16 Hb_000051_150 0.1391038079 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
17 Hb_014700_020 0.1405812899 - - tryptophan synthase beta chain, putative [Ricinus communis]
18 Hb_005695_070 0.1413728409 - - Cysteine-rich RLK 29 [Theobroma cacao]
19 Hb_007919_070 0.1414935723 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
20 Hb_000280_100 0.1434401301 - - hypothetical protein JCGZ_13378 [Jatropha curcas]

Gene co-expression network

sample Hb_163140_010 Hb_163140_010 Hb_007681_020 Hb_007681_020 Hb_163140_010--Hb_007681_020 Hb_028187_010 Hb_028187_010 Hb_163140_010--Hb_028187_010 Hb_149985_030 Hb_149985_030 Hb_163140_010--Hb_149985_030 Hb_012633_010 Hb_012633_010 Hb_163140_010--Hb_012633_010 Hb_006519_020 Hb_006519_020 Hb_163140_010--Hb_006519_020 Hb_000349_170 Hb_000349_170 Hb_163140_010--Hb_000349_170 Hb_000051_150 Hb_000051_150 Hb_007681_020--Hb_000051_150 Hb_007681_020--Hb_006519_020 Hb_001377_340 Hb_001377_340 Hb_007681_020--Hb_001377_340 Hb_001153_230 Hb_001153_230 Hb_007681_020--Hb_001153_230 Hb_088118_010 Hb_088118_010 Hb_007681_020--Hb_088118_010 Hb_000157_060 Hb_000157_060 Hb_028187_010--Hb_000157_060 Hb_002447_060 Hb_002447_060 Hb_028187_010--Hb_002447_060 Hb_028187_010--Hb_006519_020 Hb_028187_010--Hb_001153_230 Hb_000527_030 Hb_000527_030 Hb_028187_010--Hb_000527_030 Hb_022406_010 Hb_022406_010 Hb_149985_030--Hb_022406_010 Hb_149985_030--Hb_000349_170 Hb_005695_070 Hb_005695_070 Hb_149985_030--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_149985_030--Hb_001913_070 Hb_001606_040 Hb_001606_040 Hb_149985_030--Hb_001606_040 Hb_103709_010 Hb_103709_010 Hb_149985_030--Hb_103709_010 Hb_012633_010--Hb_002447_060 Hb_002079_100 Hb_002079_100 Hb_012633_010--Hb_002079_100 Hb_012633_010--Hb_006519_020 Hb_001040_050 Hb_001040_050 Hb_012633_010--Hb_001040_050 Hb_000505_030 Hb_000505_030 Hb_012633_010--Hb_000505_030 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_006519_020--Hb_001606_040 Hb_006519_020--Hb_001040_050 Hb_169753_010 Hb_169753_010 Hb_006519_020--Hb_169753_010 Hb_000349_170--Hb_005695_070 Hb_000349_170--Hb_001913_070 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.26033 32.8034 4.23195 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.64134

CAGE analysis