Hb_001377_340

Information

Type transcription factor
Description TF Family: ERF
Location Contig1377: 318562-319167
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09540g
description POPTRDRAFT_731365; AP2 domain-containing transcription factor family protein
nr
ID XP_012083196.1
description PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
swissprot
ID Q1ECI2
description Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1
trembl
ID A0A067K864
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14246 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf023-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10428: 318904-319058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_340 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
2 Hb_007681_020 0.0983045896 - - transferase, putative [Ricinus communis]
3 Hb_004003_020 0.1013778986 - - unnamed protein product [Coffea canephora]
4 Hb_052530_010 0.1136557 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
5 Hb_006519_020 0.1170113929 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_000445_320 0.1173488044 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
7 Hb_000527_030 0.1189514156 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
8 Hb_002453_040 0.1210088429 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
9 Hb_001153_230 0.1288399763 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
10 Hb_088118_010 0.1296264426 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_000051_150 0.1308285851 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
12 Hb_004007_080 0.1309000914 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
13 Hb_000816_080 0.1324817956 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
14 Hb_000283_090 0.1347866333 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_000115_190 0.135829552 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
16 Hb_028187_010 0.1403063377 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
17 Hb_054615_010 0.1412064555 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
18 Hb_000187_020 0.1414799584 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
19 Hb_000028_250 0.1419181769 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
20 Hb_002079_100 0.1432242905 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_340 Hb_001377_340 Hb_007681_020 Hb_007681_020 Hb_001377_340--Hb_007681_020 Hb_004003_020 Hb_004003_020 Hb_001377_340--Hb_004003_020 Hb_052530_010 Hb_052530_010 Hb_001377_340--Hb_052530_010 Hb_006519_020 Hb_006519_020 Hb_001377_340--Hb_006519_020 Hb_000445_320 Hb_000445_320 Hb_001377_340--Hb_000445_320 Hb_000527_030 Hb_000527_030 Hb_001377_340--Hb_000527_030 Hb_163140_010 Hb_163140_010 Hb_007681_020--Hb_163140_010 Hb_000051_150 Hb_000051_150 Hb_007681_020--Hb_000051_150 Hb_007681_020--Hb_006519_020 Hb_001153_230 Hb_001153_230 Hb_007681_020--Hb_001153_230 Hb_088118_010 Hb_088118_010 Hb_007681_020--Hb_088118_010 Hb_054615_010 Hb_054615_010 Hb_004003_020--Hb_054615_010 Hb_002121_030 Hb_002121_030 Hb_004003_020--Hb_002121_030 Hb_004003_020--Hb_000051_150 Hb_000010_320 Hb_000010_320 Hb_004003_020--Hb_000010_320 Hb_004003_020--Hb_000445_320 Hb_158845_010 Hb_158845_010 Hb_004003_020--Hb_158845_010 Hb_002453_040 Hb_002453_040 Hb_052530_010--Hb_002453_040 Hb_003226_040 Hb_003226_040 Hb_052530_010--Hb_003226_040 Hb_052530_010--Hb_000445_320 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_000193_170 Hb_000193_170 Hb_052530_010--Hb_000193_170 Hb_003464_040 Hb_003464_040 Hb_052530_010--Hb_003464_040 Hb_022406_010 Hb_022406_010 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_001040_050 Hb_001040_050 Hb_006519_020--Hb_001040_050 Hb_169753_010 Hb_169753_010 Hb_006519_020--Hb_169753_010 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_000445_320--Hb_002453_040 Hb_059832_010 Hb_059832_010 Hb_000445_320--Hb_059832_010 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_000527_030--Hb_004007_080 Hb_000527_030--Hb_002453_040 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_004241_160 Hb_004241_160 Hb_000527_030--Hb_004241_160 Hb_000083_280 Hb_000083_280 Hb_000527_030--Hb_000083_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23304 4.66072 0.868613 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0994952 0 0 0 0.454703

CAGE analysis