Hb_000193_170

Information

Type transcription factor
Description TF Family: MYB
Location Contig193: 146105-149163
Sequence    

Annotation

kegg
ID tcc:TCM_014091
description Myb domain 16-like protein
nr
ID XP_007037411.1
description Myb domain 16-like protein [Theobroma cacao]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A061FYF1
description Myb domain 16-like protein OS=Theobroma cacao GN=TCM_014091 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb domain 16-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19237: 145949-146150 , PASA_asmbl_19238: 146610-149212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_170 0.0 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
2 Hb_000375_200 0.0456058567 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_003464_040 0.053982743 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
4 Hb_012368_040 0.0626624674 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000130_400 0.0687778004 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
6 Hb_000187_020 0.0714546931 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
7 Hb_018663_010 0.0755537285 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
8 Hb_002453_040 0.079943344 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
9 Hb_052530_010 0.0813194698 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
10 Hb_006332_030 0.0816592568 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
11 Hb_000675_130 0.0837934001 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
12 Hb_000445_320 0.0840222811 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
13 Hb_002205_220 0.0853844391 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
14 Hb_010737_030 0.0857133221 - - unnamed protein product [Vitis vinifera]
15 Hb_008226_050 0.0865829994 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
16 Hb_003226_040 0.0889000361 - - PREDICTED: endoglucanase 17 [Populus euphratica]
17 Hb_059832_010 0.0920096524 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
18 Hb_000496_100 0.0937153029 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
19 Hb_011859_010 0.0965451409 - - hypothetical protein VITISV_027923 [Vitis vinifera]
20 Hb_005918_020 0.0988602339 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_000193_170 Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_000193_170--Hb_000375_200 Hb_003464_040 Hb_003464_040 Hb_000193_170--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000193_170--Hb_012368_040 Hb_000130_400 Hb_000130_400 Hb_000193_170--Hb_000130_400 Hb_000187_020 Hb_000187_020 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_000375_200--Hb_000130_400 Hb_000375_200--Hb_003464_040 Hb_000375_200--Hb_000187_020 Hb_000375_200--Hb_012368_040 Hb_003464_040--Hb_012368_040 Hb_003226_040 Hb_003226_040 Hb_003464_040--Hb_003226_040 Hb_001652_090 Hb_001652_090 Hb_003464_040--Hb_001652_090 Hb_000563_110 Hb_000563_110 Hb_003464_040--Hb_000563_110 Hb_012368_040--Hb_001652_090 Hb_012368_040--Hb_000563_110 Hb_012368_040--Hb_003226_040 Hb_059832_010 Hb_059832_010 Hb_000130_400--Hb_059832_010 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020 Hb_000130_400--Hb_000187_020 Hb_000445_320 Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000187_020--Hb_059832_010 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_010737_030 Hb_010737_030 Hb_018663_010--Hb_010737_030 Hb_008165_010 Hb_008165_010 Hb_018663_010--Hb_008165_010 Hb_000436_110 Hb_000436_110 Hb_018663_010--Hb_000436_110 Hb_018663_010--Hb_000496_100 Hb_102900_010 Hb_102900_010 Hb_018663_010--Hb_102900_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0149585 12.484 3.14134 0 0.0152595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.06646

CAGE analysis