Hb_012368_040

Information

Type -
Description -
Location Contig12368: 17579-17932
Sequence    

Annotation

kegg
ID rcu:RCOM_0429320
description hypothetical protein
nr
ID XP_002533616.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5U7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0429320 PE=4 SV=1
Gene Ontology
ID GO:0005634
description peripheral-type benzodiazepine receptor-associated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07215: 17581-18350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003464_040 0.0102380537 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_001652_090 0.0549321628 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000563_110 0.0596170592 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
5 Hb_003226_040 0.0601289837 - - PREDICTED: endoglucanase 17 [Populus euphratica]
6 Hb_000193_170 0.0626624674 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
7 Hb_000375_200 0.0658749935 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_002045_020 0.0683222843 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
9 Hb_006332_030 0.0718699091 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_000175_110 0.0728796758 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
11 Hb_028995_020 0.0749986881 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
12 Hb_000023_030 0.0773772701 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
13 Hb_011218_020 0.0820816102 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000005_390 0.0829045881 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
15 Hb_018663_010 0.0830919781 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
16 Hb_052530_010 0.0845073434 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
17 Hb_011859_010 0.0901256903 - - hypothetical protein VITISV_027923 [Vitis vinifera]
18 Hb_008165_010 0.0930540357 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
19 Hb_002453_040 0.0941068623 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
20 Hb_002205_220 0.0979278762 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]

Gene co-expression network

sample Hb_012368_040 Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_012368_040--Hb_003464_040 Hb_001652_090 Hb_001652_090 Hb_012368_040--Hb_001652_090 Hb_000563_110 Hb_000563_110 Hb_012368_040--Hb_000563_110 Hb_003226_040 Hb_003226_040 Hb_012368_040--Hb_003226_040 Hb_000193_170 Hb_000193_170 Hb_012368_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_012368_040--Hb_000375_200 Hb_003464_040--Hb_000193_170 Hb_003464_040--Hb_000375_200 Hb_003464_040--Hb_003226_040 Hb_003464_040--Hb_001652_090 Hb_003464_040--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_001652_090--Hb_000005_390 Hb_001652_090--Hb_000563_110 Hb_008642_020 Hb_008642_020 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020 Hb_002045_020 Hb_002045_020 Hb_001652_090--Hb_002045_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_000005_390 Hb_000563_110--Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060 Hb_000193_170--Hb_000375_200 Hb_000130_400 Hb_000130_400 Hb_000193_170--Hb_000130_400 Hb_000187_020 Hb_000187_020 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_000375_200--Hb_000130_400 Hb_000375_200--Hb_000187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 10.1824 1.84715 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.672646

CAGE analysis