Hb_052530_010

Information

Type -
Description -
Location Contig52530: 24124-27422
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09820g
description POPTRDRAFT_774540; hypothetical protein
nr
ID XP_012083136.1
description PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K830
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46975: 24081-27197 , PASA_asmbl_46976: 25311-25641
cDNA
(Sanger)
(ID:Location)		 052_D09.ab1: 24081-25024

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052530_010 0.0 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
2 Hb_002453_040 0.0588007761 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
3 Hb_003226_040 0.0656115029 - - PREDICTED: endoglucanase 17 [Populus euphratica]
4 Hb_000445_320 0.0795163616 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
5 Hb_000816_080 0.080466466 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
6 Hb_000193_170 0.0813194698 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
7 Hb_003464_040 0.0825704701 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_000527_030 0.0835391698 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
9 Hb_012368_040 0.0845073434 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000375_200 0.0860051445 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
11 Hb_000436_110 0.0876258783 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
12 Hb_004007_080 0.092681793 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
13 Hb_088118_010 0.0937343564 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_000187_020 0.0939583507 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
15 Hb_006332_030 0.0946772063 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
16 Hb_011859_010 0.0966201717 - - hypothetical protein VITISV_027923 [Vitis vinifera]
17 Hb_018663_010 0.0968967963 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
18 Hb_000243_180 0.1018494393 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
19 Hb_059832_010 0.1018782343 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_005918_020 0.103422673 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_052530_010 Hb_052530_010 Hb_002453_040 Hb_002453_040 Hb_052530_010--Hb_002453_040 Hb_003226_040 Hb_003226_040 Hb_052530_010--Hb_003226_040 Hb_000445_320 Hb_000445_320 Hb_052530_010--Hb_000445_320 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_000193_170 Hb_000193_170 Hb_052530_010--Hb_000193_170 Hb_003464_040 Hb_003464_040 Hb_052530_010--Hb_003464_040 Hb_002453_040--Hb_000445_320 Hb_000527_030 Hb_000527_030 Hb_002453_040--Hb_000527_030 Hb_002453_040--Hb_000193_170 Hb_006332_030 Hb_006332_030 Hb_002453_040--Hb_006332_030 Hb_002453_040--Hb_003464_040 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003226_040--Hb_003464_040 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_059832_010 Hb_059832_010 Hb_000445_320--Hb_059832_010 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_088118_010 Hb_088118_010 Hb_000816_080--Hb_088118_010 Hb_002079_100 Hb_002079_100 Hb_000816_080--Hb_002079_100 Hb_000816_080--Hb_003226_040 Hb_004007_080 Hb_004007_080 Hb_000816_080--Hb_004007_080 Hb_007558_060 Hb_007558_060 Hb_000816_080--Hb_007558_060 Hb_000375_200 Hb_000375_200 Hb_000193_170--Hb_000375_200 Hb_000193_170--Hb_003464_040 Hb_000193_170--Hb_012368_040 Hb_000130_400 Hb_000130_400 Hb_000193_170--Hb_000130_400 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_003464_040--Hb_012368_040 Hb_003464_040--Hb_000375_200 Hb_001652_090 Hb_001652_090 Hb_003464_040--Hb_001652_090 Hb_000563_110 Hb_000563_110 Hb_003464_040--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.05003 249.059 48.1714 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0177886 21.7185

CAGE analysis