Hb_005918_020

Information

Type -
Description -
Location Contig5918: 65489-71460
Sequence    

Annotation

kegg
ID rcu:RCOM_0312000
description glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)
nr
ID XP_012068981.1
description PREDICTED: protein HOTHEAD [Jatropha curcas]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID A0A067KX59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24770 PE=3 SV=1
Gene Ontology
ID GO:0016614
description protein hothead

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50274: 65693-70249 , PASA_asmbl_50275: 66672-70249 , PASA_asmbl_50276: 65908-66475 , PASA_asmbl_50278: 67431-67678
cDNA
(Sanger)
(ID:Location)		 010_K02.ab1: 65764-68567 , 019_A11.ab1: 65768-68570 , 020_J22.ab1: 65768-68630 , 023_L21.ab1: 65764-68490 , 025_O05.ab1: 65768-68648 , 026_E12.ab1: 65769-68610 , 036_N03.ab1: 65768-68646 , 044_C05.ab1: 65768-68580 , 046_G16.ab1: 65768-68651 , 048_P07.ab1: 65768-68582 , 049_E16.ab1: 65768-68553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005918_020 0.0 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
2 Hb_000445_320 0.0862331846 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
3 Hb_011859_010 0.0869680758 - - hypothetical protein VITISV_027923 [Vitis vinifera]
4 Hb_008226_050 0.0967901687 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_000193_170 0.0988602339 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
6 Hb_002453_040 0.0992243606 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
7 Hb_052530_010 0.103422673 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
8 Hb_030545_020 0.1078591431 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006332_030 0.1088150169 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_000375_200 0.1097276614 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
11 Hb_003641_040 0.1105595736 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
12 Hb_000187_020 0.1112225004 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
13 Hb_003464_040 0.1135374225 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_000816_080 0.113819999 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
15 Hb_012368_040 0.1168151403 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000527_030 0.121770242 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
17 Hb_113974_010 0.1226380717 - - DNA binding protein, putative [Ricinus communis]
18 Hb_059832_010 0.1240997998 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
19 Hb_003226_040 0.1250034742 - - PREDICTED: endoglucanase 17 [Populus euphratica]
20 Hb_000675_130 0.1255639246 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005918_020 Hb_005918_020 Hb_000445_320 Hb_000445_320 Hb_005918_020--Hb_000445_320 Hb_011859_010 Hb_011859_010 Hb_005918_020--Hb_011859_010 Hb_008226_050 Hb_008226_050 Hb_005918_020--Hb_008226_050 Hb_000193_170 Hb_000193_170 Hb_005918_020--Hb_000193_170 Hb_002453_040 Hb_002453_040 Hb_005918_020--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_005918_020--Hb_052530_010 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_000445_320--Hb_002453_040 Hb_000445_320--Hb_052530_010 Hb_059832_010 Hb_059832_010 Hb_000445_320--Hb_059832_010 Hb_000445_320--Hb_000193_170 Hb_006332_030 Hb_006332_030 Hb_011859_010--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011859_010--Hb_028995_020 Hb_011218_020 Hb_011218_020 Hb_011859_010--Hb_011218_020 Hb_001564_100 Hb_001564_100 Hb_011859_010--Hb_001564_100 Hb_000175_110 Hb_000175_110 Hb_011859_010--Hb_000175_110 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_003641_040 Hb_003641_040 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_000193_170--Hb_000375_200 Hb_003464_040 Hb_003464_040 Hb_000193_170--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000193_170--Hb_012368_040 Hb_000193_170--Hb_000130_400 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_002453_040--Hb_052530_010 Hb_000527_030 Hb_000527_030 Hb_002453_040--Hb_000527_030 Hb_002453_040--Hb_000193_170 Hb_002453_040--Hb_006332_030 Hb_002453_040--Hb_003464_040 Hb_003226_040 Hb_003226_040 Hb_052530_010--Hb_003226_040 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_052530_010--Hb_000193_170 Hb_052530_010--Hb_003464_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0280295 1.9374 228.27 55.1753 4.46335 0.361316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0636786 0.0167017 0.0317176 0.185956 16.8279

CAGE analysis