Hb_011859_010

Information

Type -
Description -
Location Contig11859: 4778-5698
Sequence    

Annotation

kegg
ID vvi:100246194
description uncharacterized LOC100246194
nr
ID CAN67913.1
description hypothetical protein VITISV_027923 [Vitis vinifera]
swissprot
ID Q9SX73
description Kinase-interacting family protein OS=Arabidopsis thaliana GN=At1g48405 PE=2 SV=1
trembl
ID A5BGM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027923 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05507: 4630-5683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011859_010 0.0 - - hypothetical protein VITISV_027923 [Vitis vinifera]
2 Hb_006332_030 0.0639254668 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
3 Hb_028995_020 0.0776882517 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
4 Hb_011218_020 0.0782616109 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001564_100 0.0801705659 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
6 Hb_000175_110 0.0867409269 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
7 Hb_005918_020 0.0869680758 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
8 Hb_001699_090 0.0876404944 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002078_310 0.0886080536 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
10 Hb_000563_110 0.0896771581 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
11 Hb_003464_040 0.09003277 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_012368_040 0.0901256903 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002205_220 0.0929591589 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
14 Hb_002453_040 0.0944225243 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
15 Hb_008226_050 0.0949688529 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
16 Hb_000193_170 0.0965451409 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
17 Hb_000375_200 0.0965493097 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
18 Hb_052530_010 0.0966201717 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
19 Hb_001652_090 0.1027314825 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000816_080 0.1028179373 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_011859_010 Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_011859_010--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011859_010--Hb_028995_020 Hb_011218_020 Hb_011218_020 Hb_011859_010--Hb_011218_020 Hb_001564_100 Hb_001564_100 Hb_011859_010--Hb_001564_100 Hb_000175_110 Hb_000175_110 Hb_011859_010--Hb_000175_110 Hb_005918_020 Hb_005918_020 Hb_011859_010--Hb_005918_020 Hb_006332_030--Hb_011218_020 Hb_006332_030--Hb_028995_020 Hb_012368_040 Hb_012368_040 Hb_006332_030--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_006332_030--Hb_003464_040 Hb_000563_110 Hb_000563_110 Hb_006332_030--Hb_000563_110 Hb_028995_020--Hb_011218_020 Hb_028995_020--Hb_000175_110 Hb_028995_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_028995_020--Hb_001652_090 Hb_028995_020--Hb_012368_040 Hb_017959_020 Hb_017959_020 Hb_011218_020--Hb_017959_020 Hb_011218_020--Hb_000563_110 Hb_011218_020--Hb_001652_090 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240 Hb_006788_130 Hb_006788_130 Hb_001564_100--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001564_100--Hb_000084_230 Hb_001235_040 Hb_001235_040 Hb_001564_100--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_001564_100--Hb_001220_020 Hb_001564_100--Hb_006332_030 Hb_000175_110--Hb_000563_110 Hb_001677_070 Hb_001677_070 Hb_000175_110--Hb_001677_070 Hb_000175_110--Hb_011218_020 Hb_000175_110--Hb_012368_040 Hb_000175_110--Hb_001652_090 Hb_000445_320 Hb_000445_320 Hb_005918_020--Hb_000445_320 Hb_008226_050 Hb_008226_050 Hb_005918_020--Hb_008226_050 Hb_000193_170 Hb_000193_170 Hb_005918_020--Hb_000193_170 Hb_002453_040 Hb_002453_040 Hb_005918_020--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_005918_020--Hb_052530_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0245035 0.0901923 17.6844 3.65299 0.0705365 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0442024 0 0.0890685 0.89862

CAGE analysis