Hb_006788_130

Information

Type -
Description -
Location Contig6788: 77786-80641
Sequence    

Annotation

kegg
ID tcc:TCM_004235
description Histone H2A 11
nr
ID XP_012092136.1
description PREDICTED: histone H2A variant 1 [Jatropha curcas]
swissprot
ID O23628
description Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1
trembl
ID A0A067JPB9
description Histone H2A OS=Jatropha curcas GN=JCGZ_21855 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2a variant 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53661: 77774-80576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_130 0.0 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
2 Hb_000084_230 0.0265841638 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
3 Hb_001564_100 0.0398587935 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
4 Hb_001235_040 0.052062743 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
5 Hb_001220_020 0.0863130019 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_004174_030 0.0899939223 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
7 Hb_003018_210 0.0941769641 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
8 Hb_002837_120 0.0964679249 - - PREDICTED: legumin A-like [Jatropha curcas]
9 Hb_011218_020 0.0965517318 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028995_020 0.0969777064 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
11 Hb_005649_050 0.0989789638 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006332_030 0.099420191 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
13 Hb_011063_030 0.0997190362 - - protein with unknown function [Ricinus communis]
14 Hb_162378_020 0.1005319256 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
15 Hb_002473_030 0.1010033302 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
16 Hb_004097_030 0.1017747466 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
17 Hb_003398_050 0.1024112015 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
18 Hb_000984_230 0.1032075971 - - -
19 Hb_004117_240 0.1041154041 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
20 Hb_002837_030 0.1048853769 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006788_130 Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_006788_130--Hb_000084_230 Hb_001564_100 Hb_001564_100 Hb_006788_130--Hb_001564_100 Hb_001235_040 Hb_001235_040 Hb_006788_130--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_006788_130--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_000084_230--Hb_001564_100 Hb_000084_230--Hb_001235_040 Hb_000084_230--Hb_004174_030 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020 Hb_001564_100--Hb_001235_040 Hb_001564_100--Hb_001220_020 Hb_011859_010 Hb_011859_010 Hb_001564_100--Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_001564_100--Hb_006332_030 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_004032_390 Hb_004032_390 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_004097_030 Hb_004097_030 Hb_004174_030--Hb_004097_030 Hb_004174_030--Hb_003018_210 Hb_005914_100 Hb_005914_100 Hb_004174_030--Hb_005914_100 Hb_004174_030--Hb_003398_050 Hb_004174_030--Hb_002928_150 Hb_003018_210--Hb_004097_030 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003018_210--Hb_003398_050 Hb_003018_210--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32535 2.11652 238.032 51.1466 0.0641348 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.36909 3.68703

CAGE analysis