Hb_005914_100

Information

Type -
Description -
Location Contig5914: 63907-65099
Sequence    

Annotation

kegg
ID rcu:RCOM_1217930
description hypothetical protein
nr
ID XP_002528376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50234: 63882-64354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004097_030 0.0260896144 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
3 Hb_002928_150 0.0475479813 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
4 Hb_004174_030 0.0522936162 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
5 Hb_007245_030 0.0538155329 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003398_050 0.0552696564 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
7 Hb_056196_020 0.071816458 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
8 Hb_001220_020 0.0722280669 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
9 Hb_003018_210 0.07360636 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
10 Hb_003776_050 0.0762473498 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
11 Hb_001168_030 0.0769519683 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_000614_200 0.0769931612 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
13 Hb_004032_390 0.0784792422 - - CDK, putative [Ricinus communis]
14 Hb_006573_310 0.0820643299 - - Tellurite resistance protein tehA, putative [Ricinus communis]
15 Hb_012395_040 0.0822417248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001699_070 0.0850601826 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000116_050 0.0853163401 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
18 Hb_001279_110 0.0854130044 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
19 Hb_003368_070 0.0859609242 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
20 Hb_000060_030 0.086690506 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005914_100 Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_005914_100--Hb_004097_030 Hb_002928_150 Hb_002928_150 Hb_005914_100--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_005914_100--Hb_004174_030 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_003398_050 Hb_003398_050 Hb_005914_100--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020 Hb_004097_030--Hb_004174_030 Hb_004097_030--Hb_002928_150 Hb_004097_030--Hb_003398_050 Hb_004097_030--Hb_056196_020 Hb_003018_210 Hb_003018_210 Hb_004097_030--Hb_003018_210 Hb_002928_150--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_002928_150--Hb_003776_050 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_002928_150--Hb_004174_030 Hb_004174_030--Hb_003018_210 Hb_004174_030--Hb_001220_020 Hb_004174_030--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_007245_030--Hb_000614_200 Hb_001168_030 Hb_001168_030 Hb_007245_030--Hb_001168_030 Hb_000316_070 Hb_000316_070 Hb_007245_030--Hb_000316_070 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_002837_120 Hb_002837_120 Hb_056196_020--Hb_002837_120 Hb_056196_020--Hb_004174_030 Hb_001969_030 Hb_001969_030 Hb_056196_020--Hb_001969_030 Hb_056196_020--Hb_003018_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0435042 0.439615 32.5218 12.797 0.0203878 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.944906 1.2033

CAGE analysis