Hb_002837_120

Information

Type -
Description -
Location Contig2837: 122087-123369
Sequence    

Annotation

kegg
ID rcu:RCOM_1319620
description nutrient reservoir, putative
nr
ID XP_012084641.1
description PREDICTED: legumin A-like [Jatropha curcas]
swissprot
ID Q9XHP0
description 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1
trembl
ID E6NUE7
description JHL25P11.12 protein OS=Jatropha curcas GN=JHL25P11.12 PE=4 SV=1
Gene Ontology
ID GO:0045735
description glutelin type-a 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29703: 121844-123677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_120 0.0 - - PREDICTED: legumin A-like [Jatropha curcas]
2 Hb_001969_030 0.049092357 - - conserved hypothetical protein [Ricinus communis]
3 Hb_056196_020 0.0726667517 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
4 Hb_000853_020 0.0788356861 - - PREDICTED: endoglucanase 17 [Populus euphratica]
5 Hb_169136_010 0.084828061 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004174_030 0.0908717771 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
7 Hb_004097_030 0.092395027 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
8 Hb_003018_210 0.0924551229 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
9 Hb_022092_100 0.0938174214 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000084_230 0.0944319617 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
11 Hb_006788_130 0.0964679249 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
12 Hb_000175_160 0.0967901527 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
13 Hb_003641_040 0.0974927148 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
14 Hb_000160_110 0.1003620007 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
15 Hb_032011_020 0.101267659 - - alpha-farnesene synthase [Ricinus communis]
16 Hb_156853_010 0.103102758 - - PREDICTED: vinorine synthase-like [Populus euphratica]
17 Hb_005141_020 0.1031442053 - - laccase, putative [Ricinus communis]
18 Hb_074660_010 0.1039483494 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
19 Hb_000221_010 0.1046143077 - - polyprotein [Oryza australiensis]
20 Hb_001019_110 0.1046420534 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]

Gene co-expression network

sample Hb_002837_120 Hb_002837_120 Hb_001969_030 Hb_001969_030 Hb_002837_120--Hb_001969_030 Hb_056196_020 Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_000853_020 Hb_000853_020 Hb_002837_120--Hb_000853_020 Hb_169136_010 Hb_169136_010 Hb_002837_120--Hb_169136_010 Hb_004174_030 Hb_004174_030 Hb_002837_120--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_002837_120--Hb_004097_030 Hb_001969_030--Hb_000853_020 Hb_000175_160 Hb_000175_160 Hb_001969_030--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_001969_030--Hb_022092_100 Hb_003641_040 Hb_003641_040 Hb_001969_030--Hb_003641_040 Hb_001969_030--Hb_056196_020 Hb_056196_020--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_056196_020--Hb_005914_100 Hb_056196_020--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_056196_020--Hb_003018_210 Hb_000853_020--Hb_000175_160 Hb_000853_020--Hb_022092_100 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_006142_020 Hb_006142_020 Hb_169136_010--Hb_006142_020 Hb_032011_020 Hb_032011_020 Hb_169136_010--Hb_032011_020 Hb_023558_010 Hb_023558_010 Hb_169136_010--Hb_023558_010 Hb_007975_070 Hb_007975_070 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_004174_030--Hb_004097_030 Hb_004174_030--Hb_003018_210 Hb_004174_030--Hb_005914_100 Hb_001220_020 Hb_001220_020 Hb_004174_030--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_004174_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_004174_030--Hb_002928_150 Hb_004097_030--Hb_005914_100 Hb_004097_030--Hb_002928_150 Hb_004097_030--Hb_003398_050 Hb_004097_030--Hb_003018_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.306226 22.0401 7.02403 0 0.0223857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.164031 0.152521

CAGE analysis