Hb_000175_160

Information

Type -
Description -
Location Contig175: 103617-105104
Sequence    

Annotation

kegg
ID rcu:RCOM_0900650
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012073433.1
description PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
swissprot
ID Q9SSD1
description Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=1 SV=1
trembl
ID B9RV79
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0900650 PE=4 SV=1
Gene Ontology
ID GO:0031225
description protein too many mouths

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16683: 103175-104979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_160 0.0 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
2 Hb_000853_020 0.0332634402 - - PREDICTED: endoglucanase 17 [Populus euphratica]
3 Hb_022092_100 0.0448095972 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000691_060 0.047119834 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
5 Hb_004117_240 0.0642224495 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
6 Hb_000307_080 0.0662280722 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000173_070 0.0662286042 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
8 Hb_003995_040 0.0662375225 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
9 Hb_000417_240 0.0662402231 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
10 Hb_000280_070 0.0662705634 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
11 Hb_000784_050 0.066291721 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
12 Hb_002151_140 0.0663907225 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
13 Hb_007975_070 0.0665239508 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
14 Hb_105767_030 0.0666709081 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003667_030 0.0671998793 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
16 Hb_000489_050 0.0675850721 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
17 Hb_130862_010 0.0683546416 - - purine permease, putative [Ricinus communis]
18 Hb_000334_100 0.0683699584 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
19 Hb_090511_010 0.0689449496 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_012675_030 0.0690307642 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]

Gene co-expression network

sample Hb_000175_160 Hb_000175_160 Hb_000853_020 Hb_000853_020 Hb_000175_160--Hb_000853_020 Hb_022092_100 Hb_022092_100 Hb_000175_160--Hb_022092_100 Hb_000691_060 Hb_000691_060 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070 Hb_000853_020--Hb_022092_100 Hb_001969_030 Hb_001969_030 Hb_000853_020--Hb_001969_030 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_022092_100--Hb_000691_060 Hb_003667_030 Hb_003667_030 Hb_022092_100--Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_022092_100--Hb_000489_050 Hb_022092_100--Hb_000334_100 Hb_090511_010 Hb_090511_010 Hb_000691_060--Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_000691_060--Hb_012675_030 Hb_130862_010 Hb_130862_010 Hb_000691_060--Hb_130862_010 Hb_000769_040 Hb_000769_040 Hb_000691_060--Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_000691_060--Hb_022862_010 Hb_105767_030 Hb_105767_030 Hb_000691_060--Hb_105767_030 Hb_004117_240--Hb_000691_060 Hb_011218_020 Hb_011218_020 Hb_004117_240--Hb_011218_020 Hb_000155_280 Hb_000155_280 Hb_004117_240--Hb_000155_280 Hb_017959_020 Hb_017959_020 Hb_004117_240--Hb_017959_020 Hb_004117_070 Hb_004117_070 Hb_004117_240--Hb_004117_070 Hb_000307_080--Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_000307_080--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_000307_080--Hb_000417_240 Hb_000280_070 Hb_000280_070 Hb_000307_080--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_000307_080--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000307_080--Hb_002151_140 Hb_000173_070--Hb_003995_040 Hb_000173_070--Hb_000417_240 Hb_000173_070--Hb_000280_070 Hb_000173_070--Hb_000784_050 Hb_000173_070--Hb_002151_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.61341 1.26542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0518591

CAGE analysis