Hb_004117_240

Information

Type -
Description -
Location Contig4117: 169066-169850
Sequence    

Annotation

kegg
ID cam:101505155
description non-specific lipid-transfer protein-like
nr
ID AII99870.1
description protease inhibitor/seed storage/ltp family [Cicer arietinum]
swissprot
ID O23758
description Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1
trembl
ID A0A076KXC0
description Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1
Gene Ontology
ID GO:0003824
description lipid transfer protein precursor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40772: 169051-169837
cDNA
(Sanger)
(ID:Location)		 002_N19.ab1: 169051-169837 , 008_L23.ab1: 169051-169832 , 013_K15.ab1: 169051-169835 , 016_I14.ab1: 169051-169833 , 016_K22.ab1: 169051-169832 , 018_F13.ab1: 169051-169779 , 019_L21.ab1: 169051-169833 , 021_J22.ab1: 169051-169833 , 024_J21.ab1: 169051-169821 , 031_A10.ab1: 169051-169835 , 036_O19.ab1: 169051-169833 , 044_I07.ab1: 169051-169835 , 046_H16.ab1: 169045-169818 , 048_P01.ab1: 169048-169835 , 052_E04.ab1: 169051-169833

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_240 0.0 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
2 Hb_000691_060 0.0639729011 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
3 Hb_000175_160 0.0642224495 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
4 Hb_011218_020 0.0657944413 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000155_280 0.068859884 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
6 Hb_017959_020 0.0703455536 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
7 Hb_004117_070 0.072593023 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
8 Hb_001926_050 0.0731623052 - - PREDICTED: peroxidase 19 [Jatropha curcas]
9 Hb_030385_030 0.0734204616 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
10 Hb_011179_010 0.0740112778 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
11 Hb_000853_020 0.0743775223 - - PREDICTED: endoglucanase 17 [Populus euphratica]
12 Hb_004722_050 0.0750539225 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
13 Hb_000173_040 0.0754174999 - - putative xylanase inhibitor, partial [Triticum aestivum]
14 Hb_154114_040 0.0756118799 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
15 Hb_000193_040 0.0763706947 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
16 Hb_022862_010 0.0770256823 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
17 Hb_006332_030 0.0776223417 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
18 Hb_002026_040 0.078208496 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
19 Hb_000769_040 0.0783721605 - - hypothetical protein VITISV_028082 [Vitis vinifera]
20 Hb_000514_010 0.078485887 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_240 Hb_004117_240 Hb_000691_060 Hb_000691_060 Hb_004117_240--Hb_000691_060 Hb_000175_160 Hb_000175_160 Hb_004117_240--Hb_000175_160 Hb_011218_020 Hb_011218_020 Hb_004117_240--Hb_011218_020 Hb_000155_280 Hb_000155_280 Hb_004117_240--Hb_000155_280 Hb_017959_020 Hb_017959_020 Hb_004117_240--Hb_017959_020 Hb_004117_070 Hb_004117_070 Hb_004117_240--Hb_004117_070 Hb_090511_010 Hb_090511_010 Hb_000691_060--Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_000691_060--Hb_012675_030 Hb_130862_010 Hb_130862_010 Hb_000691_060--Hb_130862_010 Hb_000769_040 Hb_000769_040 Hb_000691_060--Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_000691_060--Hb_022862_010 Hb_105767_030 Hb_105767_030 Hb_000691_060--Hb_105767_030 Hb_000853_020 Hb_000853_020 Hb_000175_160--Hb_000853_020 Hb_022092_100 Hb_022092_100 Hb_000175_160--Hb_022092_100 Hb_000175_160--Hb_000691_060 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070 Hb_006332_030 Hb_006332_030 Hb_011218_020--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011218_020--Hb_028995_020 Hb_011218_020--Hb_017959_020 Hb_000563_110 Hb_000563_110 Hb_011218_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_011218_020--Hb_001652_090 Hb_006485_020 Hb_006485_020 Hb_000155_280--Hb_006485_020 Hb_002026_040 Hb_002026_040 Hb_000155_280--Hb_002026_040 Hb_000155_280--Hb_017959_020 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_002376_020 Hb_002376_020 Hb_000155_280--Hb_002376_020 Hb_005170_050 Hb_005170_050 Hb_000155_280--Hb_005170_050 Hb_017959_020--Hb_006485_020 Hb_017959_020--Hb_002026_040 Hb_017959_020--Hb_005170_050 Hb_017959_020--Hb_002376_020 Hb_001926_050 Hb_001926_050 Hb_004117_070--Hb_001926_050 Hb_030385_030 Hb_030385_030 Hb_004117_070--Hb_030385_030 Hb_011179_010 Hb_011179_010 Hb_004117_070--Hb_011179_010 Hb_004722_050 Hb_004722_050 Hb_004117_070--Hb_004722_050 Hb_000173_040 Hb_000173_040 Hb_004117_070--Hb_000173_040 Hb_154114_040 Hb_154114_040 Hb_004117_070--Hb_154114_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.3768 4420.26 876.436 0 0.368422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0810662 0 0 0.38897 42.9727

CAGE analysis