Hb_005170_050

Information

Type -
Description -
Location Contig5170: 25233-26838
Sequence    

Annotation

kegg
ID pop:POPTR_0017s09580g
description hypothetical protein
nr
ID XP_011012912.1
description PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
swissprot
ID Q8GY79
description Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1
trembl
ID U5FM35
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09580g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46547: 25243-27000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005170_050 0.0 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
2 Hb_002376_020 0.0508741944 - - lectin, partial [Lathyrus palustris]
3 Hb_008642_020 0.0531368884 - - sterol desaturase, putative [Ricinus communis]
4 Hb_006485_020 0.0556012136 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
5 Hb_005550_060 0.0565542009 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
6 Hb_017959_020 0.0566662837 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
7 Hb_000005_390 0.0637314476 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
8 Hb_000155_280 0.0642429385 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
9 Hb_001519_080 0.0696852912 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_007558_060 0.0715869047 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
11 Hb_008252_010 0.0720884653 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
12 Hb_001680_060 0.0754585959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000544_150 0.0754827986 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
14 Hb_002026_040 0.079425034 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
15 Hb_011218_020 0.0800867725 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001652_090 0.0819994428 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000563_110 0.0831543809 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
18 Hb_004881_040 0.0852568661 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
19 Hb_013849_010 0.0877156002 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
20 Hb_162008_020 0.0883789397 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_005170_050 Hb_005170_050 Hb_002376_020 Hb_002376_020 Hb_005170_050--Hb_002376_020 Hb_008642_020 Hb_008642_020 Hb_005170_050--Hb_008642_020 Hb_006485_020 Hb_006485_020 Hb_005170_050--Hb_006485_020 Hb_005550_060 Hb_005550_060 Hb_005170_050--Hb_005550_060 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_000005_390 Hb_000005_390 Hb_005170_050--Hb_000005_390 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_006485_020 Hb_000155_280 Hb_000155_280 Hb_002376_020--Hb_000155_280 Hb_002376_020--Hb_000005_390 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_006485_020--Hb_000155_280 Hb_006485_020--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_000005_390 Hb_005550_060--Hb_000544_150 Hb_005550_060--Hb_000005_390 Hb_005550_060--Hb_006485_020 Hb_017959_020--Hb_000155_280 Hb_017959_020--Hb_002026_040 Hb_011218_020 Hb_011218_020 Hb_017959_020--Hb_011218_020 Hb_017959_020--Hb_002376_020 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_000544_150 Hb_000005_390--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0149207 15.1407 1.51673 0.0300099 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0321947 0.279968

CAGE analysis