Hb_005550_060

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5550: 64010-64575
Sequence    

Annotation

kegg
ID rcu:RCOM_1675610
description transcription factor, putative
nr
ID XP_002509493.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q1A173
description Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
trembl
ID B9RBF9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1675610 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48489: 63872-64629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005550_060 0.0 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
2 Hb_000544_150 0.0293535792 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
3 Hb_000005_390 0.030348788 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
4 Hb_002376_020 0.0366387844 - - lectin, partial [Lathyrus palustris]
5 Hb_008642_020 0.0483443868 - - sterol desaturase, putative [Ricinus communis]
6 Hb_005170_050 0.0565542009 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
7 Hb_006485_020 0.0569994721 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
8 Hb_008252_010 0.05776755 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
9 Hb_001652_090 0.0650513792 - - conserved hypothetical protein [Ricinus communis]
10 Hb_162008_020 0.0702830244 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
11 Hb_004881_040 0.0716853318 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
12 Hb_007558_060 0.0722238078 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
13 Hb_017959_020 0.0734543983 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
14 Hb_000155_280 0.0755465224 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
15 Hb_007741_010 0.0756989495 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
16 Hb_000563_110 0.0772051047 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
17 Hb_002045_020 0.0780579486 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
18 Hb_001680_060 0.0781730333 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001519_080 0.0792281814 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
20 Hb_000005_160 0.0813913317 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005550_060 Hb_005550_060 Hb_000544_150 Hb_000544_150 Hb_005550_060--Hb_000544_150 Hb_000005_390 Hb_000005_390 Hb_005550_060--Hb_000005_390 Hb_002376_020 Hb_002376_020 Hb_005550_060--Hb_002376_020 Hb_008642_020 Hb_008642_020 Hb_005550_060--Hb_008642_020 Hb_005170_050 Hb_005170_050 Hb_005550_060--Hb_005170_050 Hb_006485_020 Hb_006485_020 Hb_005550_060--Hb_006485_020 Hb_007741_010 Hb_007741_010 Hb_000544_150--Hb_007741_010 Hb_000544_150--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_000544_150--Hb_000005_160 Hb_000544_150--Hb_008642_020 Hb_000544_150--Hb_002376_020 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_000005_390--Hb_000563_110 Hb_000005_390--Hb_006485_020 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_006485_020 Hb_002376_020--Hb_005170_050 Hb_000155_280 Hb_000155_280 Hb_002376_020--Hb_000155_280 Hb_002376_020--Hb_000005_390 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005170_050 Hb_005170_050--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_006485_020--Hb_000155_280 Hb_006485_020--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_006485_020--Hb_002026_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 68.3018 6.0033 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.93495

CAGE analysis