Hb_007558_060

Information

Type -
Description -
Location Contig7558: 39746-40704
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18750g
description POPTRDRAFT_775434; hypothetical protein
nr
ID XP_012085232.1
description PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57027: 40048-40602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_060 0.0 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
2 Hb_008642_020 0.0386257118 - - sterol desaturase, putative [Ricinus communis]
3 Hb_000563_110 0.0624313931 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
4 Hb_001519_080 0.0679532045 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_000005_390 0.0686064377 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
6 Hb_005170_050 0.0715869047 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
7 Hb_005550_060 0.0722238078 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
8 Hb_000544_150 0.0746273301 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
9 Hb_000505_030 0.0768664722 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002045_020 0.0774534704 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
11 Hb_001652_090 0.0827872221 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002079_100 0.0833744006 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
13 Hb_004881_040 0.0836292623 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
14 Hb_011218_020 0.0838318102 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000175_110 0.0841861815 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
16 Hb_000152_200 0.0857239849 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
17 Hb_001102_030 0.0868850603 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_000005_160 0.091399705 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_000023_030 0.0919363928 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
20 Hb_002376_020 0.0925431497 - - lectin, partial [Lathyrus palustris]

Gene co-expression network

sample Hb_007558_060 Hb_007558_060 Hb_008642_020 Hb_008642_020 Hb_007558_060--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_007558_060--Hb_000563_110 Hb_001519_080 Hb_001519_080 Hb_007558_060--Hb_001519_080 Hb_000005_390 Hb_000005_390 Hb_007558_060--Hb_000005_390 Hb_005170_050 Hb_005170_050 Hb_007558_060--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_007558_060--Hb_005550_060 Hb_008642_020--Hb_000005_390 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_001652_090 Hb_001652_090 Hb_000563_110--Hb_001652_090 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_000005_390 Hb_002045_020 Hb_002045_020 Hb_000563_110--Hb_002045_020 Hb_012368_040 Hb_012368_040 Hb_000563_110--Hb_012368_040 Hb_001519_080--Hb_008642_020 Hb_001519_080--Hb_005170_050 Hb_001519_080--Hb_005550_060 Hb_001519_080--Hb_000005_390 Hb_000505_030 Hb_000505_030 Hb_001519_080--Hb_000505_030 Hb_000005_390--Hb_005550_060 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_000544_150 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_002376_020 Hb_002376_020 Hb_005170_050--Hb_002376_020 Hb_005170_050--Hb_006485_020 Hb_005170_050--Hb_005550_060 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_005550_060--Hb_000544_150 Hb_005550_060--Hb_002376_020 Hb_005550_060--Hb_006485_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0441717 8.51492 0.823927 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0392094 0.359572

CAGE analysis