Hb_001519_080

Information

Type -
Description -
Location Contig1519: 38858-62690
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_012066668.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID A0A067L1U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_080 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_008642_020 0.0623384609 - - sterol desaturase, putative [Ricinus communis]
3 Hb_007558_060 0.0679532045 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
4 Hb_005170_050 0.0696852912 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
5 Hb_005550_060 0.0792281814 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
6 Hb_000005_390 0.0805021154 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
7 Hb_000505_030 0.0829530168 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001680_060 0.0836600814 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000544_150 0.0870121227 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
10 Hb_004881_040 0.0880198319 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
11 Hb_002376_020 0.0883666001 - - lectin, partial [Lathyrus palustris]
12 Hb_000563_110 0.0893790738 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
13 Hb_006485_020 0.0937964013 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
14 Hb_001652_090 0.094621796 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011218_020 0.0956612765 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000731_030 0.0958194609 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_002079_100 0.0962948427 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
18 Hb_017959_020 0.0987356933 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
19 Hb_001061_010 0.0988766474 - - PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
20 Hb_000155_280 0.1032617138 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_080 Hb_001519_080 Hb_008642_020 Hb_008642_020 Hb_001519_080--Hb_008642_020 Hb_007558_060 Hb_007558_060 Hb_001519_080--Hb_007558_060 Hb_005170_050 Hb_005170_050 Hb_001519_080--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_001519_080--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_001519_080--Hb_000005_390 Hb_000505_030 Hb_000505_030 Hb_001519_080--Hb_000505_030 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_007558_060--Hb_000563_110 Hb_007558_060--Hb_000005_390 Hb_007558_060--Hb_005170_050 Hb_007558_060--Hb_005550_060 Hb_002376_020 Hb_002376_020 Hb_005170_050--Hb_002376_020 Hb_006485_020 Hb_006485_020 Hb_005170_050--Hb_006485_020 Hb_005170_050--Hb_005550_060 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_005550_060--Hb_000544_150 Hb_005550_060--Hb_000005_390 Hb_005550_060--Hb_002376_020 Hb_005550_060--Hb_006485_020 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_000544_150 Hb_000005_390--Hb_000563_110 Hb_000005_390--Hb_006485_020 Hb_002079_100 Hb_002079_100 Hb_000505_030--Hb_002079_100 Hb_000731_030 Hb_000731_030 Hb_000505_030--Hb_000731_030 Hb_000505_030--Hb_007558_060 Hb_000152_200 Hb_000152_200 Hb_000505_030--Hb_000152_200 Hb_001680_060 Hb_001680_060 Hb_000505_030--Hb_001680_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00668338 0.0417195 6.42832 0.625249 0.00937885 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0151262 0.0119044 0 0.0047092 0.192079

CAGE analysis