Hb_001680_060

Information

Type -
Description -
Location Contig1680: 96224-96799
Sequence    

Annotation

kegg
ID rcu:RCOM_0602330
description hypothetical protein
nr
ID XP_002522335.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SCS9
description RPW8-like protein 1 OS=Arabidopsis thaliana GN=HR1 PE=2 SV=1
trembl
ID B9S8L6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0602330 PE=4 SV=1
Gene Ontology
ID GO:0009620
description rpw8-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15608: 96064-96666 , PASA_asmbl_15609: 96884-96977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001680_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005854_060 0.0469143678 - - short-chain dehydrogenase, putative [Ricinus communis]
3 Hb_008252_010 0.0591283288 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
4 Hb_162008_040 0.0633622393 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
5 Hb_002376_020 0.0644015734 - - lectin, partial [Lathyrus palustris]
6 Hb_162008_020 0.0673234693 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
7 Hb_007157_050 0.0679286189 - - hypothetical protein RCOM_0711500 [Ricinus communis]
8 Hb_004881_040 0.0697257001 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
9 Hb_005170_050 0.0754585959 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
10 Hb_121680_010 0.0758733444 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
11 Hb_005550_060 0.0781730333 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
12 Hb_000505_030 0.0822192395 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007218_010 0.0823423617 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
14 Hb_000212_170 0.0824119613 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
15 Hb_001519_080 0.0836600814 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_021622_010 0.0839903574 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
17 Hb_000544_150 0.0860094209 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
18 Hb_006485_020 0.0875485189 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
19 Hb_008642_020 0.0907322089 - - sterol desaturase, putative [Ricinus communis]
20 Hb_000155_280 0.0918812284 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]

Gene co-expression network

sample Hb_001680_060 Hb_001680_060 Hb_005854_060 Hb_005854_060 Hb_001680_060--Hb_005854_060 Hb_008252_010 Hb_008252_010 Hb_001680_060--Hb_008252_010 Hb_162008_040 Hb_162008_040 Hb_001680_060--Hb_162008_040 Hb_002376_020 Hb_002376_020 Hb_001680_060--Hb_002376_020 Hb_162008_020 Hb_162008_020 Hb_001680_060--Hb_162008_020 Hb_007157_050 Hb_007157_050 Hb_001680_060--Hb_007157_050 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_005854_060--Hb_162008_040 Hb_007218_010 Hb_007218_010 Hb_005854_060--Hb_007218_010 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060 Hb_008252_010--Hb_162008_020 Hb_008252_010--Hb_002376_020 Hb_121680_010 Hb_121680_010 Hb_008252_010--Hb_121680_010 Hb_008252_010--Hb_162008_040 Hb_005550_060 Hb_005550_060 Hb_008252_010--Hb_005550_060 Hb_008252_010--Hb_000212_170 Hb_162008_040--Hb_000212_170 Hb_162008_040--Hb_121680_010 Hb_162008_040--Hb_162008_020 Hb_001546_100 Hb_001546_100 Hb_162008_040--Hb_001546_100 Hb_002376_020--Hb_005550_060 Hb_006485_020 Hb_006485_020 Hb_002376_020--Hb_006485_020 Hb_005170_050 Hb_005170_050 Hb_002376_020--Hb_005170_050 Hb_000155_280 Hb_000155_280 Hb_002376_020--Hb_000155_280 Hb_000005_390 Hb_000005_390 Hb_002376_020--Hb_000005_390 Hb_162008_020--Hb_121680_010 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_000190_200 Hb_000190_200 Hb_162008_020--Hb_000190_200 Hb_162008_020--Hb_002376_020 Hb_004881_040 Hb_004881_040 Hb_007157_050--Hb_004881_040 Hb_007157_050--Hb_121680_010 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_007157_050--Hb_005854_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.299029 40.5341 2.83878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.486521

CAGE analysis