Hb_000190_200

Information

Type -
Description -
Location Contig190: 293679-296766
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05000g
description POPTRDRAFT_849367; hypothetical protein
nr
ID XP_012092179.1
description PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JC34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21882 PE=4 SV=1
Gene Ontology
ID GO:0032502
description ice binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18935: 293858-294745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_200 0.0 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
2 Hb_000329_220 0.0406437401 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
3 Hb_004881_040 0.0498533495 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
4 Hb_007741_010 0.0534896737 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
5 Hb_162008_020 0.0578297288 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
6 Hb_000544_150 0.0638279752 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
7 Hb_008252_010 0.0736493559 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
8 Hb_003398_110 0.0755622622 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
9 Hb_005550_060 0.0838359323 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
10 Hb_121680_010 0.0844630651 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
11 Hb_000005_160 0.0871183141 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_007157_050 0.0926868527 - - hypothetical protein RCOM_0711500 [Ricinus communis]
13 Hb_004090_010 0.0927590678 - - Major latex protein, putative [Ricinus communis]
14 Hb_000152_200 0.0928363913 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
15 Hb_002376_020 0.0944224108 - - lectin, partial [Lathyrus palustris]
16 Hb_001680_060 0.0988181861 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008642_020 0.1003721288 - - sterol desaturase, putative [Ricinus communis]
18 Hb_162008_040 0.1015680117 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
19 Hb_005170_050 0.1050915611 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
20 Hb_007558_060 0.1051176194 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_200 Hb_000190_200 Hb_000329_220 Hb_000329_220 Hb_000190_200--Hb_000329_220 Hb_004881_040 Hb_004881_040 Hb_000190_200--Hb_004881_040 Hb_007741_010 Hb_007741_010 Hb_000190_200--Hb_007741_010 Hb_162008_020 Hb_162008_020 Hb_000190_200--Hb_162008_020 Hb_000544_150 Hb_000544_150 Hb_000190_200--Hb_000544_150 Hb_008252_010 Hb_008252_010 Hb_000190_200--Hb_008252_010 Hb_000329_220--Hb_007741_010 Hb_004090_010 Hb_004090_010 Hb_000329_220--Hb_004090_010 Hb_000329_220--Hb_004881_040 Hb_000329_220--Hb_000544_150 Hb_000329_220--Hb_162008_020 Hb_004881_040--Hb_000544_150 Hb_004881_040--Hb_162008_020 Hb_007157_050 Hb_007157_050 Hb_004881_040--Hb_007157_050 Hb_004881_040--Hb_008252_010 Hb_000005_160 Hb_000005_160 Hb_007741_010--Hb_000005_160 Hb_007741_010--Hb_000544_150 Hb_000152_200 Hb_000152_200 Hb_007741_010--Hb_000152_200 Hb_007741_010--Hb_004881_040 Hb_162008_020--Hb_008252_010 Hb_121680_010 Hb_121680_010 Hb_162008_020--Hb_121680_010 Hb_162008_040 Hb_162008_040 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_002376_020 Hb_002376_020 Hb_162008_020--Hb_002376_020 Hb_005550_060 Hb_005550_060 Hb_000544_150--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_000544_150--Hb_000005_390 Hb_000544_150--Hb_000005_160 Hb_008642_020 Hb_008642_020 Hb_000544_150--Hb_008642_020 Hb_000544_150--Hb_002376_020 Hb_008252_010--Hb_002376_020 Hb_008252_010--Hb_121680_010 Hb_008252_010--Hb_162008_040 Hb_008252_010--Hb_005550_060 Hb_000212_170 Hb_000212_170 Hb_008252_010--Hb_000212_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.64774 0.218374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0105172 0.164796

CAGE analysis