Hb_000329_220

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig329: 132065-134401
Sequence    

Annotation

kegg
ID tcc:TCM_005549
description Plant-specific transcription factor YABBY family protein isoform 1
nr
ID XP_012083613.1
description PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
swissprot
ID O22152
description Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
trembl
ID A0A067KAF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14555 PE=4 SV=1
Gene Ontology
ID GO:0003700
description axial regulator yabby 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34509: 131744-134592 , PASA_asmbl_34511: 133279-133619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_220 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
2 Hb_000190_200 0.0406437401 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
3 Hb_007741_010 0.0416867536 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
4 Hb_004090_010 0.0648675537 - - Major latex protein, putative [Ricinus communis]
5 Hb_004881_040 0.0649690914 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
6 Hb_000544_150 0.0712096745 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
7 Hb_162008_020 0.0744584585 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
8 Hb_000005_160 0.0784388601 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_000152_200 0.0802634999 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
10 Hb_003398_110 0.0836597532 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
11 Hb_008252_010 0.0921450648 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
12 Hb_005550_060 0.0966131075 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
13 Hb_121680_010 0.1014916278 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
14 Hb_000556_050 0.1051073558 - - -
15 Hb_007157_050 0.1089155542 - - hypothetical protein RCOM_0711500 [Ricinus communis]
16 Hb_177533_010 0.1105556491 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_001680_060 0.1119903715 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002376_020 0.1123138996 - - lectin, partial [Lathyrus palustris]
19 Hb_008642_020 0.1166457839 - - sterol desaturase, putative [Ricinus communis]
20 Hb_162008_040 0.1179108136 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]

Gene co-expression network

sample Hb_000329_220 Hb_000329_220 Hb_000190_200 Hb_000190_200 Hb_000329_220--Hb_000190_200 Hb_007741_010 Hb_007741_010 Hb_000329_220--Hb_007741_010 Hb_004090_010 Hb_004090_010 Hb_000329_220--Hb_004090_010 Hb_004881_040 Hb_004881_040 Hb_000329_220--Hb_004881_040 Hb_000544_150 Hb_000544_150 Hb_000329_220--Hb_000544_150 Hb_162008_020 Hb_162008_020 Hb_000329_220--Hb_162008_020 Hb_000190_200--Hb_004881_040 Hb_000190_200--Hb_007741_010 Hb_000190_200--Hb_162008_020 Hb_000190_200--Hb_000544_150 Hb_008252_010 Hb_008252_010 Hb_000190_200--Hb_008252_010 Hb_000005_160 Hb_000005_160 Hb_007741_010--Hb_000005_160 Hb_007741_010--Hb_000544_150 Hb_000152_200 Hb_000152_200 Hb_007741_010--Hb_000152_200 Hb_007741_010--Hb_004881_040 Hb_036377_010 Hb_036377_010 Hb_004090_010--Hb_036377_010 Hb_004090_010--Hb_007741_010 Hb_004090_010--Hb_000190_200 Hb_000556_050 Hb_000556_050 Hb_004090_010--Hb_000556_050 Hb_004090_010--Hb_000152_200 Hb_004881_040--Hb_000544_150 Hb_004881_040--Hb_162008_020 Hb_007157_050 Hb_007157_050 Hb_004881_040--Hb_007157_050 Hb_004881_040--Hb_008252_010 Hb_005550_060 Hb_005550_060 Hb_000544_150--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_000544_150--Hb_000005_390 Hb_000544_150--Hb_000005_160 Hb_008642_020 Hb_008642_020 Hb_000544_150--Hb_008642_020 Hb_002376_020 Hb_002376_020 Hb_000544_150--Hb_002376_020 Hb_162008_020--Hb_008252_010 Hb_121680_010 Hb_121680_010 Hb_162008_020--Hb_121680_010 Hb_162008_040 Hb_162008_040 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_162008_020--Hb_002376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0352174 0.023493 135.902 4.32848 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.10694

CAGE analysis