Hb_003398_110

Information

Type -
Description -
Location Contig3398: 182322-186758
Sequence    

Annotation

kegg
ID rcu:RCOM_0001160
description transcription factor, putative
nr
ID XP_012089113.1
description PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01448 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_110 0.0 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
2 Hb_121680_010 0.0571211379 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
3 Hb_162008_020 0.0573907377 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
4 Hb_008252_010 0.0754929713 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
5 Hb_000190_200 0.0755622622 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
6 Hb_007157_050 0.0758188076 - - hypothetical protein RCOM_0711500 [Ricinus communis]
7 Hb_162008_030 0.0805205733 - - cytochrome p450 [Ageratina adenophora]
8 Hb_149407_010 0.08140813 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
9 Hb_162008_040 0.0828257961 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
10 Hb_000329_220 0.0836597532 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
11 Hb_000129_060 0.0841584432 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
12 Hb_004019_130 0.0861014087 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
13 Hb_029879_040 0.0872296113 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
14 Hb_004881_040 0.0889234727 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
15 Hb_002028_230 0.0899463594 - - Pectinesterase-3 precursor, putative [Ricinus communis]
16 Hb_000212_170 0.09576957 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
17 Hb_001680_060 0.1023693145 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003411_080 0.1025220767 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001546_100 0.103318377 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
20 Hb_078641_020 0.1037786106 - - Pectinesterase-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003398_110 Hb_003398_110 Hb_121680_010 Hb_121680_010 Hb_003398_110--Hb_121680_010 Hb_162008_020 Hb_162008_020 Hb_003398_110--Hb_162008_020 Hb_008252_010 Hb_008252_010 Hb_003398_110--Hb_008252_010 Hb_000190_200 Hb_000190_200 Hb_003398_110--Hb_000190_200 Hb_007157_050 Hb_007157_050 Hb_003398_110--Hb_007157_050 Hb_162008_030 Hb_162008_030 Hb_003398_110--Hb_162008_030 Hb_121680_010--Hb_162008_020 Hb_162008_040 Hb_162008_040 Hb_121680_010--Hb_162008_040 Hb_121680_010--Hb_008252_010 Hb_004019_130 Hb_004019_130 Hb_121680_010--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_121680_010--Hb_000129_060 Hb_000212_170 Hb_000212_170 Hb_121680_010--Hb_000212_170 Hb_162008_020--Hb_008252_010 Hb_162008_020--Hb_162008_040 Hb_162008_020--Hb_000190_200 Hb_002376_020 Hb_002376_020 Hb_162008_020--Hb_002376_020 Hb_008252_010--Hb_002376_020 Hb_008252_010--Hb_162008_040 Hb_005550_060 Hb_005550_060 Hb_008252_010--Hb_005550_060 Hb_008252_010--Hb_000212_170 Hb_000329_220 Hb_000329_220 Hb_000190_200--Hb_000329_220 Hb_004881_040 Hb_004881_040 Hb_000190_200--Hb_004881_040 Hb_007741_010 Hb_007741_010 Hb_000190_200--Hb_007741_010 Hb_000544_150 Hb_000544_150 Hb_000190_200--Hb_000544_150 Hb_000190_200--Hb_008252_010 Hb_007157_050--Hb_004881_040 Hb_007157_050--Hb_121680_010 Hb_001680_060 Hb_001680_060 Hb_007157_050--Hb_001680_060 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_005854_060 Hb_005854_060 Hb_007157_050--Hb_005854_060 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_149407_010 Hb_149407_010 Hb_162008_030--Hb_149407_010 Hb_029879_040 Hb_029879_040 Hb_162008_030--Hb_029879_040 Hb_002028_230 Hb_002028_230 Hb_162008_030--Hb_002028_230 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.43264 0.12785 0.0123763 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.046454

CAGE analysis