Hb_005854_060

Information

Type -
Description -
Location Contig5854: 70419-75759
Sequence    

Annotation

kegg
ID rcu:RCOM_1202730
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_002531343.1
description short-chain dehydrogenase, putative [Ricinus communis]
swissprot
ID Q6RVV4
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1
trembl
ID B9SZC4
description Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1202730 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49969: 70341-74768 , PASA_asmbl_49970: 74233-74478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005854_060 0.0 - - short-chain dehydrogenase, putative [Ricinus communis]
2 Hb_001680_060 0.0469143678 - - conserved hypothetical protein [Ricinus communis]
3 Hb_021622_010 0.0504278624 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
4 Hb_162008_040 0.0529431878 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
5 Hb_007218_010 0.0634999601 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
6 Hb_000212_170 0.064260253 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
7 Hb_012573_060 0.0656781604 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
8 Hb_000680_080 0.0657736823 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
9 Hb_022929_010 0.0658021022 - - zinc/iron transporter, putative [Ricinus communis]
10 Hb_002030_140 0.0659069429 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
11 Hb_001546_100 0.0666859264 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
12 Hb_121680_010 0.0708522315 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
13 Hb_014109_030 0.0717967682 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
14 Hb_000844_120 0.0729288624 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
15 Hb_003994_210 0.0731832874 - - zinc finger protein, putative [Ricinus communis]
16 Hb_008252_010 0.0736380912 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
17 Hb_002028_230 0.0738209518 - - Pectinesterase-3 precursor, putative [Ricinus communis]
18 Hb_004447_040 0.0738481456 - - cyclin d, putative [Ricinus communis]
19 Hb_007157_050 0.075058529 - - hypothetical protein RCOM_0711500 [Ricinus communis]
20 Hb_013849_010 0.075526321 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_005854_060 Hb_005854_060 Hb_001680_060 Hb_001680_060 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_162008_040 Hb_162008_040 Hb_005854_060--Hb_162008_040 Hb_007218_010 Hb_007218_010 Hb_005854_060--Hb_007218_010 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060 Hb_008252_010 Hb_008252_010 Hb_001680_060--Hb_008252_010 Hb_001680_060--Hb_162008_040 Hb_002376_020 Hb_002376_020 Hb_001680_060--Hb_002376_020 Hb_162008_020 Hb_162008_020 Hb_001680_060--Hb_162008_020 Hb_007157_050 Hb_007157_050 Hb_001680_060--Hb_007157_050 Hb_000844_120 Hb_000844_120 Hb_021622_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_021622_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_021622_010--Hb_004447_040 Hb_014109_030 Hb_014109_030 Hb_021622_010--Hb_014109_030 Hb_000500_380 Hb_000500_380 Hb_021622_010--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_021622_010--Hb_004744_030 Hb_162008_040--Hb_000212_170 Hb_121680_010 Hb_121680_010 Hb_162008_040--Hb_121680_010 Hb_162008_040--Hb_008252_010 Hb_162008_040--Hb_162008_020 Hb_001546_100 Hb_001546_100 Hb_162008_040--Hb_001546_100 Hb_007218_010--Hb_162008_040 Hb_007218_010--Hb_007157_050 Hb_007218_010--Hb_121680_010 Hb_007218_010--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_007218_010--Hb_002030_140 Hb_000212_170--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000212_170--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000212_170--Hb_000680_080 Hb_000212_170--Hb_001546_100 Hb_000212_170--Hb_012573_060 Hb_012573_060--Hb_000680_080 Hb_012573_060--Hb_022929_010 Hb_012573_060--Hb_002030_140 Hb_012573_060--Hb_001546_100 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.245063 36.4963 2.57416 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0938654

CAGE analysis