Hb_021622_010

Information

Type -
Description -
Location Contig21622: 16-775
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06160g
description hypothetical protein
nr
ID XP_006386286.1
description hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GKR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22364: 423-856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021622_010 0.0 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
2 Hb_000844_120 0.0398461786 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
3 Hb_003994_210 0.0398551004 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004447_040 0.039916337 - - cyclin d, putative [Ricinus communis]
5 Hb_014109_030 0.0399165159 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
6 Hb_000500_380 0.0418712885 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
7 Hb_004744_030 0.0420818131 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_046150_010 0.0430900043 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
9 Hb_002186_150 0.0431027617 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
10 Hb_011846_020 0.0438227792 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
11 Hb_002837_010 0.0464349405 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
12 Hb_007816_010 0.0491394975 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
13 Hb_005854_060 0.0504278624 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_012573_060 0.050530748 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
15 Hb_013849_010 0.0508182865 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
16 Hb_000680_080 0.0530281564 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
17 Hb_022929_010 0.0533530407 - - zinc/iron transporter, putative [Ricinus communis]
18 Hb_002585_050 0.0540201803 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002030_140 0.054323724 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
20 Hb_001546_100 0.058599497 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]

Gene co-expression network

sample Hb_021622_010 Hb_021622_010 Hb_000844_120 Hb_000844_120 Hb_021622_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_021622_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_021622_010--Hb_004447_040 Hb_014109_030 Hb_014109_030 Hb_021622_010--Hb_014109_030 Hb_000500_380 Hb_000500_380 Hb_021622_010--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_021622_010--Hb_004744_030 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_014109_030 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_000844_120--Hb_046150_010 Hb_003994_210--Hb_004447_040 Hb_003994_210--Hb_014109_030 Hb_003994_210--Hb_000500_380 Hb_003994_210--Hb_004744_030 Hb_003994_210--Hb_046150_010 Hb_004447_040--Hb_014109_030 Hb_004447_040--Hb_000500_380 Hb_004447_040--Hb_004744_030 Hb_004447_040--Hb_046150_010 Hb_014109_030--Hb_000500_380 Hb_014109_030--Hb_004744_030 Hb_014109_030--Hb_046150_010 Hb_000500_380--Hb_004744_030 Hb_000500_380--Hb_046150_010 Hb_002186_150 Hb_002186_150 Hb_000500_380--Hb_002186_150 Hb_011846_020 Hb_011846_020 Hb_000500_380--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_000500_380--Hb_002837_010 Hb_004744_030--Hb_046150_010 Hb_004744_030--Hb_002186_150 Hb_004744_030--Hb_011846_020 Hb_004744_030--Hb_002837_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.291235 83.713 7.82167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis