Hb_007218_010

Information

Type -
Description -
Location Contig7218: 4675-14472
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12400g
description POPTRDRAFT_250004; hypothetical protein
nr
ID XP_011002651.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
swissprot
ID O65924
description Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1
trembl
ID B9IQT8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12400g PE=3 SV=2
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at1g05700 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55661: 12633-13293 , PASA_asmbl_55662: 8716-14476 , PASA_asmbl_55663: 8716-14476 , PASA_asmbl_55664: 12597-12933 , PASA_asmbl_55666: 9245-14476 , PASA_asmbl_55667: 9245-14476 , PASA_asmbl_55668: 11126-72132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
2 Hb_005854_060 0.0634999601 - - short-chain dehydrogenase, putative [Ricinus communis]
3 Hb_162008_040 0.0710191587 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
4 Hb_007157_050 0.07608785 - - hypothetical protein RCOM_0711500 [Ricinus communis]
5 Hb_121680_010 0.0775988433 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
6 Hb_001546_100 0.0780248743 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
7 Hb_002030_140 0.0787540219 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
8 Hb_002028_230 0.0789754486 - - Pectinesterase-3 precursor, putative [Ricinus communis]
9 Hb_022929_010 0.0789955226 - - zinc/iron transporter, putative [Ricinus communis]
10 Hb_000212_170 0.0790157193 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
11 Hb_000680_080 0.079083379 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
12 Hb_012573_060 0.0798886548 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
13 Hb_021622_010 0.0819363314 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
14 Hb_001680_060 0.0823423617 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004019_130 0.0824556324 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
16 Hb_000129_060 0.0845251442 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
17 Hb_000077_430 0.0847364942 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
18 Hb_008252_010 0.0889683479 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
19 Hb_014109_030 0.0907972864 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
20 Hb_000844_120 0.0922134885 - - hypothetical protein JCGZ_09179 [Jatropha curcas]

Gene co-expression network

sample Hb_007218_010 Hb_007218_010 Hb_005854_060 Hb_005854_060 Hb_007218_010--Hb_005854_060 Hb_162008_040 Hb_162008_040 Hb_007218_010--Hb_162008_040 Hb_007157_050 Hb_007157_050 Hb_007218_010--Hb_007157_050 Hb_121680_010 Hb_121680_010 Hb_007218_010--Hb_121680_010 Hb_001546_100 Hb_001546_100 Hb_007218_010--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_007218_010--Hb_002030_140 Hb_001680_060 Hb_001680_060 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_005854_060--Hb_162008_040 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060 Hb_162008_040--Hb_000212_170 Hb_162008_040--Hb_121680_010 Hb_008252_010 Hb_008252_010 Hb_162008_040--Hb_008252_010 Hb_162008_020 Hb_162008_020 Hb_162008_040--Hb_162008_020 Hb_162008_040--Hb_001546_100 Hb_004881_040 Hb_004881_040 Hb_007157_050--Hb_004881_040 Hb_007157_050--Hb_121680_010 Hb_007157_050--Hb_001680_060 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_007157_050--Hb_005854_060 Hb_121680_010--Hb_162008_020 Hb_121680_010--Hb_008252_010 Hb_004019_130 Hb_004019_130 Hb_121680_010--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_121680_010--Hb_000129_060 Hb_121680_010--Hb_000212_170 Hb_001546_100--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_001546_100--Hb_012573_060 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_002030_140--Hb_022929_010 Hb_002030_140--Hb_000680_080 Hb_002030_140--Hb_012573_060 Hb_014109_030 Hb_014109_030 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00744076 0.394966 105.35 6.22007 0 0.0209163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.574054 0.132859 0 0.0316458 0.197869

CAGE analysis