Hb_000129_060

Information

Type -
Description -
Location Contig129: 187786-191080
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03140g
description POPTRDRAFT_776984; hypothetical protein
nr
ID XP_011041378.1
description PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
swissprot
ID Q08891
description Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2
trembl
ID B9IHM0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08791: 187847-189529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000129_060 0.0 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
2 Hb_004019_130 0.0057407517 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
3 Hb_162008_030 0.0169704508 - - cytochrome p450 [Ageratina adenophora]
4 Hb_029879_040 0.038595812 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
5 Hb_001546_100 0.0396435153 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_002028_230 0.0399187481 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_149407_010 0.0413864661 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
8 Hb_002030_140 0.0456800982 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
9 Hb_022929_010 0.0471196611 - - zinc/iron transporter, putative [Ricinus communis]
10 Hb_000680_080 0.0476085468 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
11 Hb_121680_010 0.0513536363 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
12 Hb_012573_060 0.0515073617 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
13 Hb_000077_430 0.05947456 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
14 Hb_000212_170 0.0628974068 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
15 Hb_162008_040 0.0654791102 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
16 Hb_078641_020 0.0670240224 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_003411_080 0.0735867071 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000753_220 0.0750285315 - - hypothetical protein RCOM_1467930 [Ricinus communis]
19 Hb_014109_030 0.0799087132 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
20 Hb_162008_020 0.0815056837 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000129_060 Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_000129_060--Hb_004019_130 Hb_162008_030 Hb_162008_030 Hb_000129_060--Hb_162008_030 Hb_029879_040 Hb_029879_040 Hb_000129_060--Hb_029879_040 Hb_001546_100 Hb_001546_100 Hb_000129_060--Hb_001546_100 Hb_002028_230 Hb_002028_230 Hb_000129_060--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000129_060--Hb_149407_010 Hb_004019_130--Hb_162008_030 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_004019_130--Hb_029879_040 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_162008_030--Hb_001546_100 Hb_029879_040--Hb_149407_010 Hb_029879_040--Hb_002028_230 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430 Hb_001546_100--Hb_002030_140 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_001546_100--Hb_012573_060 Hb_001546_100--Hb_000077_430 Hb_003411_080 Hb_003411_080 Hb_002028_230--Hb_003411_080 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_149407_010 Hb_149407_010--Hb_004019_130 Hb_149407_010--Hb_003411_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.63716 0.188967 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis