Hb_003411_080

Information

Type -
Description -
Location Contig3411: 122186-125017
Sequence    

Annotation

kegg
ID rcu:RCOM_0352870
description hypothetical protein
nr
ID XP_002529120.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L7U7
description ACD11 homolog protein OS=Arabidopsis thaliana GN=At4g39670 PE=2 SV=1
trembl
ID B9ST01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0352870 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ceramide-1-phosphate transfer protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35657: 117235-122118 , PASA_asmbl_35660: 122196-124989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002028_230 0.0397865046 - - Pectinesterase-3 precursor, putative [Ricinus communis]
3 Hb_000206_080 0.0533837999 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
4 Hb_149407_010 0.0636017777 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
5 Hb_162008_030 0.0666595912 - - cytochrome p450 [Ageratina adenophora]
6 Hb_000129_060 0.0735867071 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
7 Hb_029879_040 0.0744636493 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
8 Hb_004019_130 0.0766193487 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
9 Hb_136620_010 0.0768357444 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
10 Hb_121680_010 0.0915185278 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
11 Hb_078641_020 0.0937762664 - - Pectinesterase-2 precursor, putative [Ricinus communis]
12 Hb_005854_060 0.0944439586 - - short-chain dehydrogenase, putative [Ricinus communis]
13 Hb_007157_050 0.0968535564 - - hypothetical protein RCOM_0711500 [Ricinus communis]
14 Hb_007218_010 0.0990550617 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
15 Hb_001546_100 0.0992565382 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
16 Hb_162008_040 0.1004212314 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
17 Hb_003398_110 0.1025220767 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
18 Hb_002030_140 0.1038781989 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
19 Hb_003147_020 0.104223378 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
20 Hb_022929_010 0.1049989323 - - zinc/iron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003411_080 Hb_003411_080 Hb_002028_230 Hb_002028_230 Hb_003411_080--Hb_002028_230 Hb_000206_080 Hb_000206_080 Hb_003411_080--Hb_000206_080 Hb_149407_010 Hb_149407_010 Hb_003411_080--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_003411_080--Hb_162008_030 Hb_000129_060 Hb_000129_060 Hb_003411_080--Hb_000129_060 Hb_029879_040 Hb_029879_040 Hb_003411_080--Hb_029879_040 Hb_002028_230--Hb_162008_030 Hb_002028_230--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_149407_010 Hb_002028_230--Hb_029879_040 Hb_136620_010 Hb_136620_010 Hb_000206_080--Hb_136620_010 Hb_000206_080--Hb_002028_230 Hb_000206_080--Hb_149407_010 Hb_000206_080--Hb_162008_030 Hb_005854_060 Hb_005854_060 Hb_000206_080--Hb_005854_060 Hb_149407_010--Hb_162008_030 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_000129_060 Hb_149407_010--Hb_004019_130 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_029879_040 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_029879_040--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0222528 2.68217 0.0656063 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis