Hb_007157_050

Information

Type -
Description -
Location Contig7157: 88959-91955
Sequence    

Annotation

kegg
ID rcu:RCOM_0711500
description hypothetical protein
nr
ID XP_002516265.1
description hypothetical protein RCOM_0711500 [Ricinus communis]
swissprot
ID Q6AWT8
description Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana GN=GG3 PE=2 SV=1
trembl
ID B9RR96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711500 PE=4 SV=1
Gene Ontology
ID GO:0005834
description guanine nucleotide-binding protein subunit gamma 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55441: 89445-92221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007157_050 0.0 - - hypothetical protein RCOM_0711500 [Ricinus communis]
2 Hb_004881_040 0.0658833272 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
3 Hb_121680_010 0.067892956 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
4 Hb_001680_060 0.0679286189 - - conserved hypothetical protein [Ricinus communis]
5 Hb_162008_020 0.0713174975 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
6 Hb_162008_040 0.0716797062 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
7 Hb_005854_060 0.075058529 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_008252_010 0.0757462638 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
9 Hb_003398_110 0.0758188076 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
10 Hb_007218_010 0.07608785 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
11 Hb_002028_230 0.0849575901 - - Pectinesterase-3 precursor, putative [Ricinus communis]
12 Hb_000212_170 0.0901079607 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
13 Hb_000190_200 0.0926868527 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
14 Hb_004019_130 0.0937461507 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
15 Hb_000129_060 0.0941950546 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
16 Hb_029879_040 0.0948661565 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
17 Hb_003411_080 0.0968535564 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002376_020 0.0972858672 - - lectin, partial [Lathyrus palustris]
19 Hb_000592_120 0.0974776311 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
20 Hb_162008_030 0.0974849739 - - cytochrome p450 [Ageratina adenophora]

Gene co-expression network

sample Hb_007157_050 Hb_007157_050 Hb_004881_040 Hb_004881_040 Hb_007157_050--Hb_004881_040 Hb_121680_010 Hb_121680_010 Hb_007157_050--Hb_121680_010 Hb_001680_060 Hb_001680_060 Hb_007157_050--Hb_001680_060 Hb_162008_020 Hb_162008_020 Hb_007157_050--Hb_162008_020 Hb_162008_040 Hb_162008_040 Hb_007157_050--Hb_162008_040 Hb_005854_060 Hb_005854_060 Hb_007157_050--Hb_005854_060 Hb_000190_200 Hb_000190_200 Hb_004881_040--Hb_000190_200 Hb_000544_150 Hb_000544_150 Hb_004881_040--Hb_000544_150 Hb_004881_040--Hb_162008_020 Hb_000329_220 Hb_000329_220 Hb_004881_040--Hb_000329_220 Hb_008252_010 Hb_008252_010 Hb_004881_040--Hb_008252_010 Hb_121680_010--Hb_162008_020 Hb_121680_010--Hb_162008_040 Hb_121680_010--Hb_008252_010 Hb_004019_130 Hb_004019_130 Hb_121680_010--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_121680_010--Hb_000129_060 Hb_000212_170 Hb_000212_170 Hb_121680_010--Hb_000212_170 Hb_001680_060--Hb_005854_060 Hb_001680_060--Hb_008252_010 Hb_001680_060--Hb_162008_040 Hb_002376_020 Hb_002376_020 Hb_001680_060--Hb_002376_020 Hb_001680_060--Hb_162008_020 Hb_162008_020--Hb_008252_010 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_162008_020--Hb_000190_200 Hb_162008_020--Hb_002376_020 Hb_162008_040--Hb_000212_170 Hb_162008_040--Hb_008252_010 Hb_162008_040--Hb_005854_060 Hb_001546_100 Hb_001546_100 Hb_162008_040--Hb_001546_100 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_007218_010 Hb_007218_010 Hb_005854_060--Hb_007218_010 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102591 23.5313 1.0827 0.0279044 0.0329846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0502344 0 0.0203047 0.202493

CAGE analysis