Hb_121680_010

Information

Type -
Description -
Location Contig121680: 126-2188
Sequence    

Annotation

kegg
ID tcc:TCM_014515
description Sieve element occlusion e, putative
nr
ID XP_012084695.1
description PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LLK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06597: 405-1904 , PASA_asmbl_06598: 1907-2486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121680_010 0.0 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
2 Hb_162008_020 0.0373253293 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
3 Hb_162008_040 0.0400765063 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
4 Hb_008252_010 0.0438150336 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
5 Hb_004019_130 0.0506931334 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
6 Hb_000129_060 0.0513536363 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
7 Hb_000212_170 0.051818915 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
8 Hb_162008_030 0.0567459013 - - cytochrome p450 [Ageratina adenophora]
9 Hb_003398_110 0.0571211379 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
10 Hb_001546_100 0.0592834536 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
11 Hb_002030_140 0.0626432071 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
12 Hb_022929_010 0.0635031949 - - zinc/iron transporter, putative [Ricinus communis]
13 Hb_000680_080 0.0638000294 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_002028_230 0.0645566846 - - Pectinesterase-3 precursor, putative [Ricinus communis]
15 Hb_012573_060 0.0662492742 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
16 Hb_029879_040 0.0666231024 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
17 Hb_007157_050 0.067892956 - - hypothetical protein RCOM_0711500 [Ricinus communis]
18 Hb_005854_060 0.0708522315 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_149407_010 0.0711364774 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
20 Hb_000077_430 0.0733696302 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]

Gene co-expression network

sample Hb_121680_010 Hb_121680_010 Hb_162008_020 Hb_162008_020 Hb_121680_010--Hb_162008_020 Hb_162008_040 Hb_162008_040 Hb_121680_010--Hb_162008_040 Hb_008252_010 Hb_008252_010 Hb_121680_010--Hb_008252_010 Hb_004019_130 Hb_004019_130 Hb_121680_010--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_121680_010--Hb_000129_060 Hb_000212_170 Hb_000212_170 Hb_121680_010--Hb_000212_170 Hb_162008_020--Hb_008252_010 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_000190_200 Hb_000190_200 Hb_162008_020--Hb_000190_200 Hb_002376_020 Hb_002376_020 Hb_162008_020--Hb_002376_020 Hb_162008_040--Hb_000212_170 Hb_162008_040--Hb_008252_010 Hb_005854_060 Hb_005854_060 Hb_162008_040--Hb_005854_060 Hb_001546_100 Hb_001546_100 Hb_162008_040--Hb_001546_100 Hb_008252_010--Hb_002376_020 Hb_005550_060 Hb_005550_060 Hb_008252_010--Hb_005550_060 Hb_008252_010--Hb_000212_170 Hb_004019_130--Hb_000129_060 Hb_162008_030 Hb_162008_030 Hb_004019_130--Hb_162008_030 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_029879_040 Hb_029879_040 Hb_004019_130--Hb_029879_040 Hb_000129_060--Hb_162008_030 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_002028_230 Hb_002028_230 Hb_000129_060--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000129_060--Hb_149407_010 Hb_000212_170--Hb_002030_140 Hb_000212_170--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000212_170--Hb_000680_080 Hb_000212_170--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000212_170--Hb_012573_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0106292 138.478 6.26028 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00917974 0.723894

CAGE analysis