Hb_000556_050

Information

Type -
Description -
Location Contig556: 40524-42205
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48500: 40319-40495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_050 0.0 - - -
2 Hb_005198_010 0.0402203182 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
3 Hb_000005_160 0.0608613522 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_000152_200 0.0774873488 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
5 Hb_019762_030 0.0788054861 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
6 Hb_177533_010 0.0791173535 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
7 Hb_007741_010 0.0799703428 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
8 Hb_017358_060 0.0838778452 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
9 Hb_004117_060 0.0922106181 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
10 Hb_000023_030 0.093993755 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
11 Hb_000853_340 0.0954955515 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
12 Hb_004090_010 0.1003147053 - - Major latex protein, putative [Ricinus communis]
13 Hb_002235_260 0.101586053 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
14 Hb_001921_040 0.1039337706 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_000329_220 0.1051073558 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
16 Hb_002045_020 0.1068339002 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
17 Hb_155874_020 0.1129901039 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
18 Hb_001926_010 0.1152661273 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
19 Hb_000544_150 0.1155354671 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
20 Hb_063584_010 0.1157406235 - - hypothetical protein JCGZ_10530 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_050 Hb_000556_050 Hb_005198_010 Hb_005198_010 Hb_000556_050--Hb_005198_010 Hb_000005_160 Hb_000005_160 Hb_000556_050--Hb_000005_160 Hb_000152_200 Hb_000152_200 Hb_000556_050--Hb_000152_200 Hb_019762_030 Hb_019762_030 Hb_000556_050--Hb_019762_030 Hb_177533_010 Hb_177533_010 Hb_000556_050--Hb_177533_010 Hb_007741_010 Hb_007741_010 Hb_000556_050--Hb_007741_010 Hb_005198_010--Hb_019762_030 Hb_005198_010--Hb_000005_160 Hb_004117_060 Hb_004117_060 Hb_005198_010--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_005198_010--Hb_002235_260 Hb_005198_010--Hb_177533_010 Hb_000005_160--Hb_007741_010 Hb_000005_160--Hb_000152_200 Hb_000544_150 Hb_000544_150 Hb_000005_160--Hb_000544_150 Hb_000023_030 Hb_000023_030 Hb_000005_160--Hb_000023_030 Hb_002045_020 Hb_002045_020 Hb_000005_160--Hb_002045_020 Hb_000152_200--Hb_177533_010 Hb_000152_200--Hb_007741_010 Hb_000152_200--Hb_000544_150 Hb_000152_200--Hb_005198_010 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_019762_030--Hb_002235_260 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_177533_010--Hb_000005_160 Hb_006909_050 Hb_006909_050 Hb_177533_010--Hb_006909_050 Hb_177533_010--Hb_007741_010 Hb_000329_220 Hb_000329_220 Hb_007741_010--Hb_000329_220 Hb_007741_010--Hb_000544_150 Hb_000190_200 Hb_000190_200 Hb_007741_010--Hb_000190_200 Hb_004881_040 Hb_004881_040 Hb_007741_010--Hb_004881_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.563494 0.025023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0597981

CAGE analysis