Hb_177533_010

Information

Type -
Description -
Location Contig177533: 1479-3586
Sequence    

Annotation

kegg
ID rcu:RCOM_1487300
description Serine/threonine-protein kinase-transforming protein raf, putative (EC:2.7.10.2)
nr
ID XP_002515931.1
description Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
swissprot
ID C0LGR6
description Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2
trembl
ID B9RQB2
description Serine/threonine-protein kinase-transforming protein raf, putative OS=Ricinus communis GN=RCOM_1487300 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-transforming protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17049: 1441-2864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177533_010 0.0 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
2 Hb_000152_200 0.0561771246 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
3 Hb_000005_160 0.0678945662 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_006909_050 0.0713449421 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
5 Hb_005198_010 0.0741554766 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
6 Hb_000556_050 0.0791173535 - - -
7 Hb_007741_010 0.0850379539 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
8 Hb_000023_030 0.0857260725 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
9 Hb_002045_020 0.0890443371 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
10 Hb_001921_040 0.0911763829 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
11 Hb_004117_060 0.0948863281 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
12 Hb_007558_060 0.1001560964 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
13 Hb_000544_150 0.1005655328 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
14 Hb_000731_030 0.1024924875 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_002235_260 0.103109222 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_001926_010 0.1040576274 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
17 Hb_003226_040 0.1066487343 - - PREDICTED: endoglucanase 17 [Populus euphratica]
18 Hb_004881_040 0.106852847 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
19 Hb_000243_180 0.1077953596 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
20 Hb_000505_030 0.10867848 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_177533_010 Hb_177533_010 Hb_000152_200 Hb_000152_200 Hb_177533_010--Hb_000152_200 Hb_000005_160 Hb_000005_160 Hb_177533_010--Hb_000005_160 Hb_006909_050 Hb_006909_050 Hb_177533_010--Hb_006909_050 Hb_005198_010 Hb_005198_010 Hb_177533_010--Hb_005198_010 Hb_000556_050 Hb_000556_050 Hb_177533_010--Hb_000556_050 Hb_007741_010 Hb_007741_010 Hb_177533_010--Hb_007741_010 Hb_000152_200--Hb_000005_160 Hb_000152_200--Hb_007741_010 Hb_000544_150 Hb_000544_150 Hb_000152_200--Hb_000544_150 Hb_000152_200--Hb_000556_050 Hb_000152_200--Hb_005198_010 Hb_000005_160--Hb_007741_010 Hb_000005_160--Hb_000544_150 Hb_000023_030 Hb_000023_030 Hb_000005_160--Hb_000023_030 Hb_000005_160--Hb_000556_050 Hb_002045_020 Hb_002045_020 Hb_000005_160--Hb_002045_020 Hb_000243_180 Hb_000243_180 Hb_006909_050--Hb_000243_180 Hb_006909_050--Hb_002045_020 Hb_006909_050--Hb_000023_030 Hb_007558_060 Hb_007558_060 Hb_006909_050--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_006909_050--Hb_000731_030 Hb_005198_010--Hb_000556_050 Hb_019762_030 Hb_019762_030 Hb_005198_010--Hb_019762_030 Hb_005198_010--Hb_000005_160 Hb_004117_060 Hb_004117_060 Hb_005198_010--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_005198_010--Hb_002235_260 Hb_000556_050--Hb_019762_030 Hb_000556_050--Hb_007741_010 Hb_000329_220 Hb_000329_220 Hb_007741_010--Hb_000329_220 Hb_007741_010--Hb_000544_150 Hb_000190_200 Hb_000190_200 Hb_007741_010--Hb_000190_200 Hb_004881_040 Hb_004881_040 Hb_007741_010--Hb_004881_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116713 30.0445 1.92117 0.013453 0.0289948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0257541 0.0966184 0.0102859 2.47409

CAGE analysis