Hb_000731_030

Information

Type transcription factor
Description TF Family: LOB
Location Contig731: 46454-47204
Sequence    

Annotation

kegg
ID rcu:RCOM_0174840
description LOB domain-containing protein, putative
nr
ID XP_002527499.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SZE8
description LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1
trembl
ID B9SND0
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0174840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55970: 46556-46900 , PASA_asmbl_55971: 46934-47212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_030 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_000505_030 0.0666317032 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002079_100 0.0879965309 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
4 Hb_000152_200 0.0896599508 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
5 Hb_006909_050 0.0958166219 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
6 Hb_001519_080 0.0958194609 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_007558_060 0.1003217762 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
8 Hb_177533_010 0.1024924875 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
9 Hb_004881_040 0.1093997456 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
10 Hb_000005_160 0.1154795041 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_000544_150 0.1155782555 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
12 Hb_008642_020 0.1168209931 - - sterol desaturase, putative [Ricinus communis]
13 Hb_002447_060 0.1177945769 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
14 Hb_001680_060 0.1180655216 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007741_010 0.1181741249 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
16 Hb_078954_020 0.1213122298 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
17 Hb_002045_020 0.1223052051 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
18 Hb_005550_060 0.1231201884 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
19 Hb_000816_080 0.1235720815 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
20 Hb_001241_020 0.1236727767 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]

Gene co-expression network

sample Hb_000731_030 Hb_000731_030 Hb_000505_030 Hb_000505_030 Hb_000731_030--Hb_000505_030 Hb_002079_100 Hb_002079_100 Hb_000731_030--Hb_002079_100 Hb_000152_200 Hb_000152_200 Hb_000731_030--Hb_000152_200 Hb_006909_050 Hb_006909_050 Hb_000731_030--Hb_006909_050 Hb_001519_080 Hb_001519_080 Hb_000731_030--Hb_001519_080 Hb_007558_060 Hb_007558_060 Hb_000731_030--Hb_007558_060 Hb_000505_030--Hb_002079_100 Hb_000505_030--Hb_007558_060 Hb_000505_030--Hb_000152_200 Hb_001680_060 Hb_001680_060 Hb_000505_030--Hb_001680_060 Hb_000505_030--Hb_001519_080 Hb_002447_060 Hb_002447_060 Hb_002079_100--Hb_002447_060 Hb_002079_100--Hb_007558_060 Hb_012633_010 Hb_012633_010 Hb_002079_100--Hb_012633_010 Hb_000816_080 Hb_000816_080 Hb_002079_100--Hb_000816_080 Hb_000005_160 Hb_000005_160 Hb_000152_200--Hb_000005_160 Hb_177533_010 Hb_177533_010 Hb_000152_200--Hb_177533_010 Hb_007741_010 Hb_007741_010 Hb_000152_200--Hb_007741_010 Hb_000544_150 Hb_000544_150 Hb_000152_200--Hb_000544_150 Hb_000556_050 Hb_000556_050 Hb_000152_200--Hb_000556_050 Hb_005198_010 Hb_005198_010 Hb_000152_200--Hb_005198_010 Hb_006909_050--Hb_177533_010 Hb_000243_180 Hb_000243_180 Hb_006909_050--Hb_000243_180 Hb_002045_020 Hb_002045_020 Hb_006909_050--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_006909_050--Hb_000023_030 Hb_006909_050--Hb_007558_060 Hb_008642_020 Hb_008642_020 Hb_001519_080--Hb_008642_020 Hb_001519_080--Hb_007558_060 Hb_005170_050 Hb_005170_050 Hb_001519_080--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_001519_080--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_001519_080--Hb_000005_390 Hb_007558_060--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_007558_060--Hb_000563_110 Hb_007558_060--Hb_000005_390 Hb_007558_060--Hb_005170_050 Hb_007558_060--Hb_005550_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155712 7.90652 0.571766 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0695402 0 0 0.409209

CAGE analysis