Hb_000816_080

Information

Type -
Description -
Location Contig816: 71438-73105
Sequence    

Annotation

kegg
ID tcc:TCM_017056
description Transcription factor bHLH61 isoform 1
nr
ID XP_007031706.1
description Transcription factor bHLH61 isoform 1 [Theobroma cacao]
swissprot
ID Q9LXA9
description Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1
trembl
ID A0A061EDZ5
description Transcription factor bHLH61 isoform 1 OS=Theobroma cacao GN=TCM_017056 PE=4 SV=1
Gene Ontology
ID GO:0016597
description transcription factor scream2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59403: 71212-73266 , PASA_asmbl_59404: 72455-72849
cDNA
(Sanger)
(ID:Location)		 045_M05.ab1: 71212-73195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_080 0.0 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
2 Hb_088118_010 0.0754043208 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_052530_010 0.080466466 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
4 Hb_002079_100 0.0898474559 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
5 Hb_003226_040 0.0911209718 - - PREDICTED: endoglucanase 17 [Populus euphratica]
6 Hb_004007_080 0.0927033086 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
7 Hb_007558_060 0.0980586475 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
8 Hb_011859_010 0.1028179373 - - hypothetical protein VITISV_027923 [Vitis vinifera]
9 Hb_000243_180 0.1029050721 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
10 Hb_001921_040 0.1029842404 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
11 Hb_000563_110 0.1047090701 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
12 Hb_000445_320 0.1099853146 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
13 Hb_001926_010 0.1104401688 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
14 Hb_002045_020 0.1123026299 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
15 Hb_002453_040 0.1123922661 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
16 Hb_000175_110 0.1127209353 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
17 Hb_001677_070 0.1131535201 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
18 Hb_000505_030 0.1133734182 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005918_020 0.113819999 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
20 Hb_006519_020 0.1147056301 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_080 Hb_000816_080 Hb_088118_010 Hb_088118_010 Hb_000816_080--Hb_088118_010 Hb_052530_010 Hb_052530_010 Hb_000816_080--Hb_052530_010 Hb_002079_100 Hb_002079_100 Hb_000816_080--Hb_002079_100 Hb_003226_040 Hb_003226_040 Hb_000816_080--Hb_003226_040 Hb_004007_080 Hb_004007_080 Hb_000816_080--Hb_004007_080 Hb_007558_060 Hb_007558_060 Hb_000816_080--Hb_007558_060 Hb_089736_010 Hb_089736_010 Hb_088118_010--Hb_089736_010 Hb_054615_010 Hb_054615_010 Hb_088118_010--Hb_054615_010 Hb_001926_010 Hb_001926_010 Hb_088118_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_088118_010--Hb_001921_040 Hb_088118_010--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_052530_010--Hb_002453_040 Hb_052530_010--Hb_003226_040 Hb_000445_320 Hb_000445_320 Hb_052530_010--Hb_000445_320 Hb_000193_170 Hb_000193_170 Hb_052530_010--Hb_000193_170 Hb_003464_040 Hb_003464_040 Hb_052530_010--Hb_003464_040 Hb_000505_030 Hb_000505_030 Hb_002079_100--Hb_000505_030 Hb_002447_060 Hb_002447_060 Hb_002079_100--Hb_002447_060 Hb_002079_100--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_002079_100--Hb_000731_030 Hb_012633_010 Hb_012633_010 Hb_002079_100--Hb_012633_010 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003226_040--Hb_003464_040 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060 Hb_000527_030 Hb_000527_030 Hb_004007_080--Hb_000527_030 Hb_006519_020 Hb_006519_020 Hb_004007_080--Hb_006519_020 Hb_004007_080--Hb_052530_010 Hb_103339_010 Hb_103339_010 Hb_004007_080--Hb_103339_010 Hb_008642_020 Hb_008642_020 Hb_007558_060--Hb_008642_020 Hb_000563_110 Hb_000563_110 Hb_007558_060--Hb_000563_110 Hb_001519_080 Hb_001519_080 Hb_007558_060--Hb_001519_080 Hb_000005_390 Hb_000005_390 Hb_007558_060--Hb_000005_390 Hb_005170_050 Hb_005170_050 Hb_007558_060--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_007558_060--Hb_005550_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.335125 17.1894 2.40273 0.0522543 0.0498331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0847273 1.34177

CAGE analysis