Hb_001921_040

Information

Type -
Description -
Location Contig1921: 50246-51533
Sequence    

Annotation

kegg
ID pxb:103937794
description XET2; probable xyloglucan endotransglucosylase/hydrolase protein 23
nr
ID XP_012066223.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
swissprot
ID Q38910
description Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1
trembl
ID S5MMS2
description Xyloglucan endotransglucosylase/hydrolase OS=Pyrus x bretschneideri GN=XET2 PE=2 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19150: 50066-51565 , PASA_asmbl_19152: 50066-51537
cDNA
(Sanger)
(ID:Location)		 027_P09.ab1: 50066-50831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001921_040 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
2 Hb_002235_260 0.0464469663 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
3 Hb_004117_060 0.0588226863 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
4 Hb_001926_010 0.0619943243 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
5 Hb_000243_180 0.0726808456 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
6 Hb_005198_010 0.0748712622 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
7 Hb_003226_040 0.0803271596 - - PREDICTED: endoglucanase 17 [Populus euphratica]
8 Hb_000023_030 0.0809030623 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
9 Hb_019762_030 0.0825839693 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
10 Hb_088118_010 0.0857463209 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_001677_070 0.0909337094 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
12 Hb_002045_020 0.0909537055 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
13 Hb_000282_010 0.0910738925 - - conserved hypothetical protein [Ricinus communis]
14 Hb_177533_010 0.0911763829 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
15 Hb_000436_110 0.0930875337 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
16 Hb_008165_010 0.0950285719 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
17 Hb_000465_110 0.099234779 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
18 Hb_006909_050 0.1018008311 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
19 Hb_000005_160 0.102977634 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_000816_080 0.1029842404 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001921_040 Hb_001921_040 Hb_002235_260 Hb_002235_260 Hb_001921_040--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_001921_040--Hb_004117_060 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_000243_180 Hb_000243_180 Hb_001921_040--Hb_000243_180 Hb_005198_010 Hb_005198_010 Hb_001921_040--Hb_005198_010 Hb_003226_040 Hb_003226_040 Hb_001921_040--Hb_003226_040 Hb_002235_260--Hb_004117_060 Hb_019762_030 Hb_019762_030 Hb_002235_260--Hb_019762_030 Hb_008165_010 Hb_008165_010 Hb_002235_260--Hb_008165_010 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_002235_260--Hb_005198_010 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_004117_060--Hb_019762_030 Hb_000282_010 Hb_000282_010 Hb_001926_010--Hb_000282_010 Hb_001926_010--Hb_002235_260 Hb_001123_340 Hb_001123_340 Hb_001926_010--Hb_001123_340 Hb_001926_010--Hb_019762_030 Hb_001926_010--Hb_004117_060 Hb_000243_180--Hb_003226_040 Hb_000243_180--Hb_004117_060 Hb_000243_180--Hb_002235_260 Hb_006909_050 Hb_006909_050 Hb_000243_180--Hb_006909_050 Hb_001677_070 Hb_001677_070 Hb_000243_180--Hb_001677_070 Hb_000556_050 Hb_000556_050 Hb_005198_010--Hb_000556_050 Hb_005198_010--Hb_019762_030 Hb_000005_160 Hb_000005_160 Hb_005198_010--Hb_000005_160 Hb_005198_010--Hb_004117_060 Hb_177533_010 Hb_177533_010 Hb_005198_010--Hb_177533_010 Hb_003226_040--Hb_002045_020 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_003226_040--Hb_004117_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179023 37.5536 3.74293 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0612858 0 0 0.175141 4.57856

CAGE analysis