Hb_005198_010

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig5198: 26168-29907
Sequence    

Annotation

kegg
ID vvi:100254328
description axial regulator YABBY 5
nr
ID XP_012078813.1
description PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
swissprot
ID Q8GW46
description Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
trembl
ID A0A067KKT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13349 PE=4 SV=1
Gene Ontology
ID GO:0007275
description axial regulator yabby 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46662: 26132-29924 , PASA_asmbl_46663: 26813-26971
cDNA
(Sanger)
(ID:Location)		 013_E01.ab1: 26247-29692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005198_010 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
2 Hb_000556_050 0.0402203182 - - -
3 Hb_019762_030 0.0611931389 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
4 Hb_000005_160 0.0640709021 - - tonoplast intrinsic protein, putative [Ricinus communis]
5 Hb_004117_060 0.0697170492 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
6 Hb_002235_260 0.0709530356 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
7 Hb_177533_010 0.0741554766 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
8 Hb_001921_040 0.0748712622 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
9 Hb_000023_030 0.0762051464 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
10 Hb_000152_200 0.0790007427 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
11 Hb_000853_340 0.084177748 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
12 Hb_002045_020 0.0903817886 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
13 Hb_001926_010 0.0921819138 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
14 Hb_007741_010 0.0931456783 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
15 Hb_017358_060 0.0982577656 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
16 Hb_155874_020 0.1082320968 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
17 Hb_003226_040 0.1090030572 - - PREDICTED: endoglucanase 17 [Populus euphratica]
18 Hb_000465_110 0.1090746726 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
19 Hb_063584_010 0.1091357351 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
20 Hb_000282_010 0.1102466093 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005198_010 Hb_005198_010 Hb_000556_050 Hb_000556_050 Hb_005198_010--Hb_000556_050 Hb_019762_030 Hb_019762_030 Hb_005198_010--Hb_019762_030 Hb_000005_160 Hb_000005_160 Hb_005198_010--Hb_000005_160 Hb_004117_060 Hb_004117_060 Hb_005198_010--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_005198_010--Hb_002235_260 Hb_177533_010 Hb_177533_010 Hb_005198_010--Hb_177533_010 Hb_000556_050--Hb_000005_160 Hb_000152_200 Hb_000152_200 Hb_000556_050--Hb_000152_200 Hb_000556_050--Hb_019762_030 Hb_000556_050--Hb_177533_010 Hb_007741_010 Hb_007741_010 Hb_000556_050--Hb_007741_010 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_019762_030--Hb_002235_260 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_000005_160--Hb_007741_010 Hb_000005_160--Hb_000152_200 Hb_000544_150 Hb_000544_150 Hb_000005_160--Hb_000544_150 Hb_000023_030 Hb_000023_030 Hb_000005_160--Hb_000023_030 Hb_002045_020 Hb_002045_020 Hb_000005_160--Hb_002045_020 Hb_004117_060--Hb_002235_260 Hb_004117_060--Hb_000023_030 Hb_001921_040 Hb_001921_040 Hb_004117_060--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_004117_060--Hb_008165_010 Hb_004117_060--Hb_002045_020 Hb_002235_260--Hb_001921_040 Hb_002235_260--Hb_008165_010 Hb_002235_260--Hb_000023_030 Hb_177533_010--Hb_000152_200 Hb_177533_010--Hb_000005_160 Hb_006909_050 Hb_006909_050 Hb_177533_010--Hb_006909_050 Hb_177533_010--Hb_007741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0403102 87.9934 5.43998 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11073 0 0 0 10.0121

CAGE analysis