Hb_002235_260

Information

Type transcription factor
Description TF Family: MYB
Location Contig2235: 187481-189411
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12230g
description POPTRDRAFT_825568; hypothetical protein
nr
ID XP_002323871.1
description hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9IK06
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12230g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23227: 187101-189630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_260 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
2 Hb_004117_060 0.0279115315 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
3 Hb_001921_040 0.0464469663 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
4 Hb_019762_030 0.0618113622 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
5 Hb_008165_010 0.0618499936 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
6 Hb_000023_030 0.0643707302 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
7 Hb_005198_010 0.0709530356 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
8 Hb_000243_180 0.0722571548 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
9 Hb_003226_040 0.0732255358 - - PREDICTED: endoglucanase 17 [Populus euphratica]
10 Hb_001926_010 0.0736114859 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
11 Hb_000436_110 0.0748854149 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
12 Hb_002045_020 0.0797913422 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
13 Hb_102900_010 0.0869793828 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
14 Hb_000853_340 0.0876254329 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
15 Hb_018663_010 0.0893404628 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
16 Hb_001677_070 0.0921041348 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
17 Hb_031862_190 0.0958297675 - - -
18 Hb_000465_110 0.0975594349 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
19 Hb_000751_010 0.0983983685 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010737_030 0.0992568044 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002235_260 Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_002235_260--Hb_004117_060 Hb_001921_040 Hb_001921_040 Hb_002235_260--Hb_001921_040 Hb_019762_030 Hb_019762_030 Hb_002235_260--Hb_019762_030 Hb_008165_010 Hb_008165_010 Hb_002235_260--Hb_008165_010 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_005198_010 Hb_005198_010 Hb_002235_260--Hb_005198_010 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_001921_040 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_004117_060--Hb_019762_030 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_000243_180 Hb_000243_180 Hb_001921_040--Hb_000243_180 Hb_001921_040--Hb_005198_010 Hb_003226_040 Hb_003226_040 Hb_001921_040--Hb_003226_040 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_019762_030--Hb_005198_010 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_000436_110 Hb_000436_110 Hb_008165_010--Hb_000436_110 Hb_102900_010 Hb_102900_010 Hb_008165_010--Hb_102900_010 Hb_018663_010 Hb_018663_010 Hb_008165_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_008165_010--Hb_010737_030 Hb_000023_030--Hb_002045_020 Hb_000023_030--Hb_003226_040 Hb_000005_160 Hb_000005_160 Hb_000023_030--Hb_000005_160 Hb_000563_110 Hb_000563_110 Hb_000023_030--Hb_000563_110 Hb_000556_050 Hb_000556_050 Hb_005198_010--Hb_000556_050 Hb_005198_010--Hb_000005_160 Hb_005198_010--Hb_004117_060 Hb_177533_010 Hb_177533_010 Hb_005198_010--Hb_177533_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0140108 38.316 4.33354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0385341 0 0 0.0606669 5.09333

CAGE analysis