Hb_006909_050

Information

Type transcription factor
Description TF Family: OFP
Location Contig6909: 68467-69117
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01840g
description POPTRDRAFT_765128; hypothetical protein
nr
ID XP_002310994.2
description hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
swissprot
ID Q9FMC8
description Transcription repressor OFP13 OS=Arabidopsis thaliana GN=OFP13 PE=2 SV=1
trembl
ID B9HKM2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s01840g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54334: 68436-69207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_050 0.0 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
2 Hb_177533_010 0.0713449421 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
3 Hb_000243_180 0.0762399101 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
4 Hb_002045_020 0.0906714917 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
5 Hb_000023_030 0.0928997177 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
6 Hb_007558_060 0.0957455334 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
7 Hb_000731_030 0.0958166219 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_003226_040 0.0979720186 - - PREDICTED: endoglucanase 17 [Populus euphratica]
9 Hb_000563_110 0.0999351466 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
10 Hb_000005_160 0.1009194993 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_000152_200 0.1012021412 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
12 Hb_001921_040 0.1018008311 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_004117_060 0.1034988779 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
14 Hb_008642_020 0.1042019365 - - sterol desaturase, putative [Ricinus communis]
15 Hb_001519_080 0.1099118652 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_002235_260 0.1105990605 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
17 Hb_000005_390 0.1129179401 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
18 Hb_005198_010 0.1139328983 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
19 Hb_000544_150 0.1147611889 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
20 Hb_007741_010 0.1192506792 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006909_050 Hb_006909_050 Hb_177533_010 Hb_177533_010 Hb_006909_050--Hb_177533_010 Hb_000243_180 Hb_000243_180 Hb_006909_050--Hb_000243_180 Hb_002045_020 Hb_002045_020 Hb_006909_050--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_006909_050--Hb_000023_030 Hb_007558_060 Hb_007558_060 Hb_006909_050--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_006909_050--Hb_000731_030 Hb_000152_200 Hb_000152_200 Hb_177533_010--Hb_000152_200 Hb_000005_160 Hb_000005_160 Hb_177533_010--Hb_000005_160 Hb_005198_010 Hb_005198_010 Hb_177533_010--Hb_005198_010 Hb_000556_050 Hb_000556_050 Hb_177533_010--Hb_000556_050 Hb_007741_010 Hb_007741_010 Hb_177533_010--Hb_007741_010 Hb_003226_040 Hb_003226_040 Hb_000243_180--Hb_003226_040 Hb_004117_060 Hb_004117_060 Hb_000243_180--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_000243_180--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_000243_180--Hb_001921_040 Hb_001677_070 Hb_001677_070 Hb_000243_180--Hb_001677_070 Hb_002045_020--Hb_000023_030 Hb_002045_020--Hb_003226_040 Hb_000563_110 Hb_000563_110 Hb_002045_020--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_002045_020--Hb_000005_390 Hb_002045_020--Hb_000005_160 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090 Hb_000023_030--Hb_004117_060 Hb_000023_030--Hb_003226_040 Hb_000023_030--Hb_000005_160 Hb_000023_030--Hb_002235_260 Hb_000023_030--Hb_000563_110 Hb_008642_020 Hb_008642_020 Hb_007558_060--Hb_008642_020 Hb_007558_060--Hb_000563_110 Hb_001519_080 Hb_001519_080 Hb_007558_060--Hb_001519_080 Hb_007558_060--Hb_000005_390 Hb_005170_050 Hb_005170_050 Hb_007558_060--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_007558_060--Hb_005550_060 Hb_000505_030 Hb_000505_030 Hb_000731_030--Hb_000505_030 Hb_002079_100 Hb_002079_100 Hb_000731_030--Hb_002079_100 Hb_000731_030--Hb_000152_200 Hb_000731_030--Hb_001519_080 Hb_000731_030--Hb_007558_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0721614 18.6768 1.79028 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.140916 0.124623 0.0287655 1.38028

CAGE analysis