Hb_169136_010

Information

Type -
Description -
Location Contig169136: 736-2493
Sequence    

Annotation

kegg
ID rcu:RCOM_0066480
description hypothetical protein
nr
ID XP_002531427.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC4
description F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1
trembl
ID B9SZK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0066480 PE=4 SV=1
Gene Ontology
ID GO:0009506
description f-box protein at1g10780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169136_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006142_020 0.0616857023 - - JHL25P11.12 [Jatropha curcas]
3 Hb_032011_020 0.0738087846 - - alpha-farnesene synthase [Ricinus communis]
4 Hb_002837_120 0.084828061 - - PREDICTED: legumin A-like [Jatropha curcas]
5 Hb_023558_010 0.0856329486 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_007975_070 0.0890400942 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
7 Hb_105767_030 0.089051207 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000417_240 0.0891758 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
9 Hb_003995_040 0.0891836058 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
10 Hb_000173_070 0.0892246058 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
11 Hb_000307_080 0.0892935438 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000280_070 0.0894618767 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
13 Hb_000784_050 0.0895140714 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
14 Hb_130862_010 0.0896723104 - - purine permease, putative [Ricinus communis]
15 Hb_002151_140 0.0897075763 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
16 Hb_090511_010 0.0899655994 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_012675_030 0.0900098718 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
18 Hb_003667_030 0.090770503 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
19 Hb_000769_040 0.0908301028 - - hypothetical protein VITISV_028082 [Vitis vinifera]
20 Hb_000489_050 0.091198114 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_169136_010 Hb_169136_010 Hb_006142_020 Hb_006142_020 Hb_169136_010--Hb_006142_020 Hb_032011_020 Hb_032011_020 Hb_169136_010--Hb_032011_020 Hb_002837_120 Hb_002837_120 Hb_169136_010--Hb_002837_120 Hb_023558_010 Hb_023558_010 Hb_169136_010--Hb_023558_010 Hb_007975_070 Hb_007975_070 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_108744_010 Hb_108744_010 Hb_006142_020--Hb_108744_010 Hb_064971_010 Hb_064971_010 Hb_006142_020--Hb_064971_010 Hb_000756_030 Hb_000756_030 Hb_006142_020--Hb_000756_030 Hb_152528_010 Hb_152528_010 Hb_006142_020--Hb_152528_010 Hb_000157_060 Hb_000157_060 Hb_006142_020--Hb_000157_060 Hb_032011_020--Hb_023558_010 Hb_022092_100 Hb_022092_100 Hb_032011_020--Hb_022092_100 Hb_002151_140 Hb_002151_140 Hb_032011_020--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_032011_020--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_032011_020--Hb_000280_070 Hb_001969_030 Hb_001969_030 Hb_002837_120--Hb_001969_030 Hb_056196_020 Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_000853_020 Hb_000853_020 Hb_002837_120--Hb_000853_020 Hb_004174_030 Hb_004174_030 Hb_002837_120--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_002837_120--Hb_004097_030 Hb_000417_240 Hb_000417_240 Hb_023558_010--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_023558_010--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_023558_010--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_023558_010--Hb_000307_080 Hb_023558_010--Hb_007975_070 Hb_007975_070--Hb_105767_030 Hb_007975_070--Hb_000417_240 Hb_007975_070--Hb_003995_040 Hb_007975_070--Hb_000173_070 Hb_007975_070--Hb_000307_080 Hb_007975_070--Hb_000280_070 Hb_105767_030--Hb_000417_240 Hb_105767_030--Hb_003995_040 Hb_105767_030--Hb_000173_070 Hb_105767_030--Hb_000307_080 Hb_130862_010 Hb_130862_010 Hb_105767_030--Hb_130862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0648984 3.20393 0.847546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis