Hb_000756_030

Information

Type -
Description -
Location Contig756: 19949-21849
Sequence    

Annotation

kegg
ID cit:102627129
description TMV resistance protein N-like
nr
ID XP_012068500.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57053: 20458-20840 , PASA_asmbl_57054: 21824-22266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000756_030 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_152528_010 0.0370862144 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_108744_010 0.0384870692 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000654_060 0.0743508252 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
5 Hb_006142_020 0.0887408604 - - JHL25P11.12 [Jatropha curcas]
6 Hb_004241_140 0.0998788987 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
7 Hb_001398_110 0.100741872 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
8 Hb_005649_070 0.1018192274 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000045_290 0.1073066362 - - -
10 Hb_000331_020 0.1082726194 - - cytochrome P450, putative [Ricinus communis]
11 Hb_002362_010 0.1097680285 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
12 Hb_022845_010 0.1125568437 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_169136_010 0.1181729669 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001190_030 0.1196048747 - - hypothetical protein VITISV_017115 [Vitis vinifera]
15 Hb_144649_010 0.1208337663 - - 60S ribosomal protein L34A [Hevea brasiliensis]
16 Hb_000160_110 0.1236117151 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
17 Hb_000256_170 0.1263708914 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
18 Hb_001322_220 0.1321005828 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
19 Hb_064971_010 0.1388877673 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_002837_120 0.1394582437 - - PREDICTED: legumin A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000756_030 Hb_000756_030 Hb_152528_010 Hb_152528_010 Hb_000756_030--Hb_152528_010 Hb_108744_010 Hb_108744_010 Hb_000756_030--Hb_108744_010 Hb_000654_060 Hb_000654_060 Hb_000756_030--Hb_000654_060 Hb_006142_020 Hb_006142_020 Hb_000756_030--Hb_006142_020 Hb_004241_140 Hb_004241_140 Hb_000756_030--Hb_004241_140 Hb_001398_110 Hb_001398_110 Hb_000756_030--Hb_001398_110 Hb_152528_010--Hb_108744_010 Hb_152528_010--Hb_000654_060 Hb_152528_010--Hb_001398_110 Hb_022845_010 Hb_022845_010 Hb_152528_010--Hb_022845_010 Hb_152528_010--Hb_004241_140 Hb_108744_010--Hb_006142_020 Hb_108744_010--Hb_000654_060 Hb_169136_010 Hb_169136_010 Hb_108744_010--Hb_169136_010 Hb_005649_070 Hb_005649_070 Hb_108744_010--Hb_005649_070 Hb_000654_060--Hb_022845_010 Hb_000654_060--Hb_001398_110 Hb_022465_010 Hb_022465_010 Hb_000654_060--Hb_022465_010 Hb_006142_020--Hb_169136_010 Hb_064971_010 Hb_064971_010 Hb_006142_020--Hb_064971_010 Hb_006142_020--Hb_152528_010 Hb_000157_060 Hb_000157_060 Hb_006142_020--Hb_000157_060 Hb_000045_290 Hb_000045_290 Hb_004241_140--Hb_000045_290 Hb_004241_140--Hb_005649_070 Hb_004241_140--Hb_001398_110 Hb_001117_020 Hb_001117_020 Hb_004241_140--Hb_001117_020 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_019429_020 Hb_019429_020 Hb_004241_140--Hb_019429_020 Hb_001398_110--Hb_000045_290 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_001398_110--Hb_005649_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.304661 3.66862 1.36543 0 0.0108259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis