Hb_005649_070

Information

Type -
Description -
Location Contig5649: 39101-40063
Sequence    

Annotation

kegg
ID rcu:RCOM_1025300
description hypothetical protein
nr
ID XP_002527616.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNP7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004241_140 0.0285907808 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
3 Hb_000045_290 0.0532689923 - - -
4 Hb_001398_110 0.0788934451 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
5 Hb_000164_030 0.082121642 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
6 Hb_055877_010 0.0887532012 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_048141_060 0.090330681 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
8 Hb_071654_010 0.0956843192 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
9 Hb_001117_020 0.0970702152 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
10 Hb_000756_030 0.1018192274 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_108744_010 0.1032411889 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_152528_010 0.1039991606 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_012146_010 0.1041694699 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
14 Hb_000331_020 0.1069592596 - - cytochrome P450, putative [Ricinus communis]
15 Hb_008821_030 0.1105759106 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_002267_010 0.1144422693 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
17 Hb_019429_020 0.1154776039 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_007747_070 0.1172348391 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
19 Hb_144649_010 0.1190088146 - - 60S ribosomal protein L34A [Hevea brasiliensis]
20 Hb_000256_170 0.1207864801 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]

Gene co-expression network

sample Hb_005649_070 Hb_005649_070 Hb_004241_140 Hb_004241_140 Hb_005649_070--Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_005649_070--Hb_000045_290 Hb_001398_110 Hb_001398_110 Hb_005649_070--Hb_001398_110 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_055877_010 Hb_055877_010 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060 Hb_004241_140--Hb_000045_290 Hb_004241_140--Hb_001398_110 Hb_001117_020 Hb_001117_020 Hb_004241_140--Hb_001117_020 Hb_004241_140--Hb_055877_010 Hb_019429_020 Hb_019429_020 Hb_004241_140--Hb_019429_020 Hb_000045_290--Hb_001398_110 Hb_000045_290--Hb_001117_020 Hb_000045_290--Hb_019429_020 Hb_008821_030 Hb_008821_030 Hb_000045_290--Hb_008821_030 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_000164_030--Hb_048141_060 Hb_004724_250 Hb_004724_250 Hb_000164_030--Hb_004724_250 Hb_064971_010 Hb_064971_010 Hb_000164_030--Hb_064971_010 Hb_002267_010 Hb_002267_010 Hb_000164_030--Hb_002267_010 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_012146_010 Hb_012146_010 Hb_055877_010--Hb_012146_010 Hb_007894_040 Hb_007894_040 Hb_055877_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_055877_010--Hb_007747_070 Hb_071654_010 Hb_071654_010 Hb_055877_010--Hb_071654_010 Hb_055877_010--Hb_008821_030 Hb_009385_010 Hb_009385_010 Hb_055877_010--Hb_009385_010 Hb_048141_060--Hb_002267_010 Hb_048141_060--Hb_004724_250 Hb_052764_120 Hb_052764_120 Hb_048141_060--Hb_052764_120 Hb_048141_060--Hb_071654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0663579 0.397375 0.116936 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis