Hb_004724_250

Information

Type -
Description -
Location Contig4724: 176495-177124
Sequence    

Annotation

kegg
ID rcu:RCOM_1281830
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002523829.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q652P9
description Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1
trembl
ID B9SCW0
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1281830 PE=4 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein 9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_250 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_000164_030 0.0551528146 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
3 Hb_048141_060 0.0559533934 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
4 Hb_010578_020 0.0740626401 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_064971_010 0.0743763366 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_002267_010 0.0972207643 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
7 Hb_052764_120 0.1003360149 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
8 Hb_000157_060 0.1145321604 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
9 Hb_000668_190 0.1147339107 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
10 Hb_002613_030 0.1147455696 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
11 Hb_002486_090 0.1153389706 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
12 Hb_002435_010 0.1179839451 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
13 Hb_002534_040 0.1258250275 - - Calmodulin, putative [Ricinus communis]
14 Hb_028187_010 0.1311061741 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
15 Hb_006142_020 0.1344171354 - - JHL25P11.12 [Jatropha curcas]
16 Hb_002447_060 0.1357451814 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
17 Hb_005649_070 0.1367113212 - - conserved hypothetical protein [Ricinus communis]
18 Hb_071654_010 0.1402651705 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
19 Hb_001433_120 0.1553093396 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
20 Hb_012633_010 0.1582867741 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_250 Hb_004724_250 Hb_000164_030 Hb_000164_030 Hb_004724_250--Hb_000164_030 Hb_048141_060 Hb_048141_060 Hb_004724_250--Hb_048141_060 Hb_010578_020 Hb_010578_020 Hb_004724_250--Hb_010578_020 Hb_064971_010 Hb_064971_010 Hb_004724_250--Hb_064971_010 Hb_002267_010 Hb_002267_010 Hb_004724_250--Hb_002267_010 Hb_052764_120 Hb_052764_120 Hb_004724_250--Hb_052764_120 Hb_000164_030--Hb_048141_060 Hb_000164_030--Hb_064971_010 Hb_005649_070 Hb_005649_070 Hb_000164_030--Hb_005649_070 Hb_000164_030--Hb_002267_010 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_048141_060--Hb_002267_010 Hb_048141_060--Hb_052764_120 Hb_071654_010 Hb_071654_010 Hb_048141_060--Hb_071654_010 Hb_048141_060--Hb_005649_070 Hb_010578_020--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_010578_020--Hb_002435_010 Hb_010578_020--Hb_048141_060 Hb_010578_020--Hb_002267_010 Hb_010578_020--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_064971_010--Hb_006142_020 Hb_064971_010--Hb_000157_060 Hb_002486_090 Hb_002486_090 Hb_064971_010--Hb_002486_090 Hb_064971_010--Hb_048141_060 Hb_002267_010--Hb_052764_120 Hb_002267_010--Hb_071654_010 Hb_002999_150 Hb_002999_150 Hb_002267_010--Hb_002999_150 Hb_002267_010--Hb_002435_010 Hb_052764_120--Hb_002435_010 Hb_003207_220 Hb_003207_220 Hb_052764_120--Hb_003207_220 Hb_052764_120--Hb_002999_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0343108 0.319651 0.0382502 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis