Hb_002435_010

Information

Type -
Description -
Location Contig2435: 20058-21116
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12870g
description class IV chitinase family protein
nr
ID XP_012065079.1
description PREDICTED: endochitinase PR4-like [Jatropha curcas]
swissprot
ID P27054
description Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1
trembl
ID A0A067LJ48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05731 PE=4 SV=1
Gene Ontology
ID GO:0004568
description endochitinase pr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25434: 20046-21204
cDNA
(Sanger)
(ID:Location)		 024_O22.ab1: 20046-20780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_010 0.0 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
2 Hb_052764_120 0.0757887781 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
3 Hb_002267_010 0.0861074949 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
4 Hb_010578_020 0.099249595 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_003207_220 0.1044090127 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_048141_060 0.1059057152 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
7 Hb_000668_190 0.1059524828 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
8 Hb_002534_040 0.1156104171 - - Calmodulin, putative [Ricinus communis]
9 Hb_002999_150 0.1167872568 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
10 Hb_004724_250 0.1179839451 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_071654_010 0.1191704745 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
12 Hb_000280_100 0.1211362455 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
13 Hb_000340_070 0.1236185311 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
14 Hb_000164_030 0.1254562222 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
15 Hb_000574_270 0.1341827283 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
16 Hb_127372_010 0.141526133 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
17 Hb_116420_050 0.1442621884 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
18 Hb_001143_200 0.1515846386 transcription factor TF Family: NAC NAC domain protein [Glycine max]
19 Hb_000413_220 0.1539295017 - - PREDICTED: kinesin-1 [Jatropha curcas]
20 Hb_012146_010 0.1548440425 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]

Gene co-expression network

sample Hb_002435_010 Hb_002435_010 Hb_052764_120 Hb_052764_120 Hb_002435_010--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002435_010--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_002435_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_002435_010--Hb_003207_220 Hb_048141_060 Hb_048141_060 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_052764_120--Hb_002267_010 Hb_052764_120--Hb_010578_020 Hb_052764_120--Hb_003207_220 Hb_002999_150 Hb_002999_150 Hb_052764_120--Hb_002999_150 Hb_052764_120--Hb_048141_060 Hb_071654_010 Hb_071654_010 Hb_002267_010--Hb_071654_010 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_002267_010--Hb_002999_150 Hb_004724_250 Hb_004724_250 Hb_010578_020--Hb_004724_250 Hb_010578_020--Hb_048141_060 Hb_010578_020--Hb_002267_010 Hb_010578_020--Hb_000164_030 Hb_003207_220--Hb_002999_150 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_003207_220--Hb_010578_020 Hb_048141_060--Hb_000164_030 Hb_048141_060--Hb_004724_250 Hb_048141_060--Hb_071654_010 Hb_005649_070 Hb_005649_070 Hb_048141_060--Hb_005649_070 Hb_000413_220 Hb_000413_220 Hb_000668_190--Hb_000413_220 Hb_002534_040 Hb_002534_040 Hb_000668_190--Hb_002534_040 Hb_000739_250 Hb_000739_250 Hb_000668_190--Hb_000739_250 Hb_000574_180 Hb_000574_180 Hb_000668_190--Hb_000574_180 Hb_000668_190--Hb_000164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 91.3699 445.073 47.4283 0.0435697 0.0204828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.81759 0.769003

CAGE analysis