Hb_107174_010

Information

Type -
Description -
Location Contig107174: 9244-11829
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02284: 9118-11808
cDNA
(Sanger)
(ID:Location)		 025_E14.ab1: 9118-11716

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107174_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002999_150 0.069010673 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
3 Hb_010223_010 0.0690941216 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
4 Hb_000192_030 0.1067203849 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
5 Hb_003207_220 0.1111451512 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_007894_040 0.1175686412 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
7 Hb_071654_010 0.1264367533 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
8 Hb_012146_010 0.1264758585 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
9 Hb_000953_180 0.1300316395 - - -
10 Hb_010994_020 0.1318741553 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_127372_010 0.13892901 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
12 Hb_021142_030 0.1396748668 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_055877_010 0.1409318613 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_002267_010 0.1413065097 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
15 Hb_052764_120 0.1423114601 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
16 Hb_007747_070 0.143922509 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
17 Hb_012400_020 0.1443077125 - - Spotted leaf protein, putative [Ricinus communis]
18 Hb_000251_170 0.1445365209 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
19 Hb_116420_050 0.1454384266 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
20 Hb_000997_130 0.1467929657 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_107174_010 Hb_107174_010 Hb_002999_150 Hb_002999_150 Hb_107174_010--Hb_002999_150 Hb_010223_010 Hb_010223_010 Hb_107174_010--Hb_010223_010 Hb_000192_030 Hb_000192_030 Hb_107174_010--Hb_000192_030 Hb_003207_220 Hb_003207_220 Hb_107174_010--Hb_003207_220 Hb_007894_040 Hb_007894_040 Hb_107174_010--Hb_007894_040 Hb_071654_010 Hb_071654_010 Hb_107174_010--Hb_071654_010 Hb_002999_150--Hb_003207_220 Hb_052764_120 Hb_052764_120 Hb_002999_150--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002999_150--Hb_002267_010 Hb_002999_150--Hb_071654_010 Hb_002999_150--Hb_007894_040 Hb_010223_010--Hb_000192_030 Hb_000997_130 Hb_000997_130 Hb_010223_010--Hb_000997_130 Hb_008651_010 Hb_008651_010 Hb_010223_010--Hb_008651_010 Hb_010223_010--Hb_002999_150 Hb_032071_010 Hb_032071_010 Hb_010223_010--Hb_032071_010 Hb_000953_180 Hb_000953_180 Hb_000192_030--Hb_000953_180 Hb_100395_010 Hb_100395_010 Hb_000192_030--Hb_100395_010 Hb_000365_110 Hb_000365_110 Hb_000192_030--Hb_000365_110 Hb_008948_070 Hb_008948_070 Hb_000192_030--Hb_008948_070 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_003207_220--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_012146_010 Hb_012146_010 Hb_007894_040--Hb_012146_010 Hb_007747_070 Hb_007747_070 Hb_007894_040--Hb_007747_070 Hb_055877_010 Hb_055877_010 Hb_007894_040--Hb_055877_010 Hb_021142_030 Hb_021142_030 Hb_007894_040--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_007894_040--Hb_009385_010 Hb_007894_040--Hb_071654_010 Hb_071654_010--Hb_012146_010 Hb_071654_010--Hb_055877_010 Hb_071654_010--Hb_002267_010 Hb_071654_010--Hb_007747_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0219911 6.21751 13.2206 1.97409 0.0426732 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0159271 0

CAGE analysis