Hb_009385_010

Information

Type -
Description -
Location Contig9385: 16437-17183
Sequence    

Annotation

kegg
ID tcc:TCM_039657
description Cysteine/Histidine-rich C1 domain family protein, putative
nr
ID XP_007014511.1
description Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GQK8
description Cysteine/Histidine-rich C1 domain family protein, putative OS=Theobroma cacao GN=TCM_039657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63030: 16548-17007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009385_010 0.0 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
2 Hb_001410_040 0.0094171995 - - Protein ABIL2, putative [Ricinus communis]
3 Hb_021142_030 0.0254879221 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_007747_070 0.0297941845 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
5 Hb_004788_030 0.0301039514 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
6 Hb_008821_030 0.0353582943 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
7 Hb_006083_010 0.042348258 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_007894_040 0.0587543192 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
9 Hb_012146_010 0.0670263186 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
10 Hb_055877_010 0.0731528983 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_003847_090 0.0739239543 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
12 Hb_019429_020 0.0769893831 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001117_020 0.0841855782 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
14 Hb_000371_030 0.0946399312 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_100395_010 0.0953428361 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_000277_030 0.1028479412 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_054165_010 0.1074140313 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_012400_020 0.1099786483 - - Spotted leaf protein, putative [Ricinus communis]
19 Hb_000045_290 0.1107626138 - - -
20 Hb_071654_010 0.1110229502 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]

Gene co-expression network

sample Hb_009385_010 Hb_009385_010 Hb_001410_040 Hb_001410_040 Hb_009385_010--Hb_001410_040 Hb_021142_030 Hb_021142_030 Hb_009385_010--Hb_021142_030 Hb_007747_070 Hb_007747_070 Hb_009385_010--Hb_007747_070 Hb_004788_030 Hb_004788_030 Hb_009385_010--Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_021142_030 Hb_001410_040--Hb_006083_010 Hb_001410_040--Hb_007747_070 Hb_021142_030--Hb_007747_070 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_007747_070--Hb_007894_040 Hb_012146_010 Hb_012146_010 Hb_007747_070--Hb_012146_010 Hb_007747_070--Hb_008821_030 Hb_004788_030--Hb_008821_030 Hb_004788_030--Hb_006083_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_004788_030--Hb_007747_070 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020 Hb_003847_090 Hb_003847_090 Hb_006083_010--Hb_003847_090 Hb_006083_010--Hb_008821_030 Hb_006083_010--Hb_021142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.3513 0.869771 0.348062 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis