Hb_007894_040

Information

Type -
Description -
Location Contig7894: 42197-43747
Sequence    

Annotation

kegg
ID pop:POPTR_0128s00200g
description hypothetical protein
nr
ID XP_012070821.1
description PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8GT75
description NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2
trembl
ID A0A067KVW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00885 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nep1-interacting 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_040 0.0 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
2 Hb_012146_010 0.0186801191 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
3 Hb_007747_070 0.0315200617 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
4 Hb_055877_010 0.0417865961 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_021142_030 0.0478637309 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_009385_010 0.0587543192 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
7 Hb_071654_010 0.059191377 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
8 Hb_001410_040 0.067873061 - - Protein ABIL2, putative [Ricinus communis]
9 Hb_008821_030 0.0750860479 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_004788_030 0.0822683863 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
11 Hb_006083_010 0.1008466621 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
12 Hb_100395_010 0.1032783324 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_002999_150 0.1052705195 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_002267_010 0.1108452699 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
15 Hb_000192_030 0.1128352414 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
16 Hb_012400_020 0.1150656195 - - Spotted leaf protein, putative [Ricinus communis]
17 Hb_000371_030 0.115449884 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
18 Hb_001117_020 0.1172984221 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
19 Hb_107174_010 0.1175686412 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_019429_020 0.1189509921 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_007894_040 Hb_007894_040 Hb_012146_010 Hb_012146_010 Hb_007894_040--Hb_012146_010 Hb_007747_070 Hb_007747_070 Hb_007894_040--Hb_007747_070 Hb_055877_010 Hb_055877_010 Hb_007894_040--Hb_055877_010 Hb_021142_030 Hb_021142_030 Hb_007894_040--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_007894_040--Hb_009385_010 Hb_071654_010 Hb_071654_010 Hb_007894_040--Hb_071654_010 Hb_012146_010--Hb_055877_010 Hb_012146_010--Hb_007747_070 Hb_012146_010--Hb_071654_010 Hb_012146_010--Hb_021142_030 Hb_012146_010--Hb_009385_010 Hb_007747_070--Hb_009385_010 Hb_007747_070--Hb_021142_030 Hb_001410_040 Hb_001410_040 Hb_007747_070--Hb_001410_040 Hb_008821_030 Hb_008821_030 Hb_007747_070--Hb_008821_030 Hb_055877_010--Hb_007747_070 Hb_055877_010--Hb_071654_010 Hb_055877_010--Hb_008821_030 Hb_055877_010--Hb_009385_010 Hb_021142_030--Hb_009385_010 Hb_021142_030--Hb_001410_040 Hb_004788_030 Hb_004788_030 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010 Hb_002267_010 Hb_002267_010 Hb_071654_010--Hb_002267_010 Hb_071654_010--Hb_007747_070 Hb_002999_150 Hb_002999_150 Hb_071654_010--Hb_002999_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13041 0.361417 0.100721 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis