Hb_001410_040

Information

Type -
Description -
Location Contig1410: 56419-59133
Sequence    

Annotation

kegg
ID rcu:RCOM_1312200
description Protein ABIL2, putative
nr
ID XP_002518857.1
description Protein ABIL2, putative [Ricinus communis]
swissprot
ID Q9M3A3
description Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=2 SV=1
trembl
ID B9RYN8
description Protein ABIL2, putative OS=Ricinus communis GN=RCOM_1312200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_040 0.0 - - Protein ABIL2, putative [Ricinus communis]
2 Hb_009385_010 0.0094171995 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
3 Hb_004788_030 0.0226557548 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
4 Hb_008821_030 0.0320248824 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
5 Hb_021142_030 0.0334231119 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_006083_010 0.033690222 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_007747_070 0.0381088743 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
8 Hb_003847_090 0.0662989812 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
9 Hb_007894_040 0.067873061 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
10 Hb_019429_020 0.0703876741 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_012146_010 0.0752854268 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
12 Hb_001117_020 0.0792861786 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
13 Hb_055877_010 0.0797269826 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_000371_030 0.0929412843 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_000277_030 0.0947259295 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_100395_010 0.0984307447 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_054165_010 0.1015440879 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_001002_020 0.1074877082 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000045_290 0.1093567984 - - -
20 Hb_128083_010 0.1114198487 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001410_040 Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_001410_040--Hb_009385_010 Hb_004788_030 Hb_004788_030 Hb_001410_040--Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_001410_040--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_001410_040--Hb_021142_030 Hb_006083_010 Hb_006083_010 Hb_001410_040--Hb_006083_010 Hb_007747_070 Hb_007747_070 Hb_001410_040--Hb_007747_070 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_009385_010--Hb_006083_010 Hb_004788_030--Hb_008821_030 Hb_004788_030--Hb_006083_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_004788_030--Hb_007747_070 Hb_008821_030--Hb_007747_070 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020 Hb_021142_030--Hb_007747_070 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_003847_090 Hb_003847_090 Hb_006083_010--Hb_003847_090 Hb_006083_010--Hb_008821_030 Hb_006083_010--Hb_021142_030 Hb_007747_070--Hb_007894_040 Hb_012146_010 Hb_012146_010 Hb_007747_070--Hb_012146_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0573323 0.14133 0.0596999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis