Hb_001117_020

Information

Type -
Description -
Location Contig1117: 29846-32790
Sequence    

Annotation

kegg
ID cit:102625262
description mitogen-activated protein kinase kinase 2-like
nr
ID XP_006451541.1
description hypothetical protein CICLE_v10008579mg [Citrus clementina]
swissprot
ID Q9S7U9
description Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2
trembl
ID V4UQN8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008579mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_020 0.0 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
2 Hb_019429_020 0.0195847266 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000045_290 0.047102835 - - -
4 Hb_001398_110 0.0479769012 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
5 Hb_008821_030 0.0492756701 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_004788_030 0.0580514882 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
7 Hb_004241_140 0.0702950778 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
8 Hb_001410_040 0.0792861786 - - Protein ABIL2, putative [Ricinus communis]
9 Hb_000371_030 0.084030635 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
10 Hb_009385_010 0.0841855782 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
11 Hb_006083_010 0.0846735126 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
12 Hb_007747_070 0.0903942194 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
13 Hb_003847_090 0.0945140281 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
14 Hb_000331_020 0.0955626734 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005649_070 0.0970702152 - - conserved hypothetical protein [Ricinus communis]
16 Hb_055877_010 0.1002798436 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_023712_020 0.1019453568 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
18 Hb_021142_030 0.1085856177 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_004586_050 0.1090454479 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
20 Hb_012146_010 0.1109632813 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]

Gene co-expression network

sample Hb_001117_020 Hb_001117_020 Hb_019429_020 Hb_019429_020 Hb_001117_020--Hb_019429_020 Hb_000045_290 Hb_000045_290 Hb_001117_020--Hb_000045_290 Hb_001398_110 Hb_001398_110 Hb_001117_020--Hb_001398_110 Hb_008821_030 Hb_008821_030 Hb_001117_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_001117_020--Hb_004788_030 Hb_004241_140 Hb_004241_140 Hb_001117_020--Hb_004241_140 Hb_019429_020--Hb_008821_030 Hb_019429_020--Hb_004788_030 Hb_019429_020--Hb_001398_110 Hb_019429_020--Hb_000045_290 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010 Hb_000045_290--Hb_004241_140 Hb_000045_290--Hb_001398_110 Hb_005649_070 Hb_005649_070 Hb_000045_290--Hb_005649_070 Hb_000045_290--Hb_008821_030 Hb_001398_110--Hb_004241_140 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_001398_110--Hb_005649_070 Hb_008821_030--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_008821_030--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_008821_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_008821_030--Hb_007747_070 Hb_004788_030--Hb_001410_040 Hb_004788_030--Hb_009385_010 Hb_004788_030--Hb_006083_010 Hb_004788_030--Hb_007747_070 Hb_004241_140--Hb_005649_070 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_004241_140--Hb_019429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113746 0.429612 0.204925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis