Hb_001398_110

Information

Type -
Description -
Location Contig1398: 214041-214772
Sequence    

Annotation

kegg
ID rcu:RCOM_1173760
description Early nodulin 55-2 precursor, putative
nr
ID XP_002517891.1
description Early nodulin 55-2 precursor, putative [Ricinus communis]
swissprot
ID Q5JNJ5
description Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1
trembl
ID B9RVX2
description Early nodulin 55-2, putative OS=Ricinus communis GN=RCOM_1173760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001398_110 0.0 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
2 Hb_000045_290 0.0312296475 - - -
3 Hb_001117_020 0.0479769012 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
4 Hb_004241_140 0.0514075735 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
5 Hb_019429_020 0.0652662416 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000331_020 0.0727106312 - - cytochrome P450, putative [Ricinus communis]
7 Hb_005649_070 0.0788934451 - - conserved hypothetical protein [Ricinus communis]
8 Hb_152528_010 0.087303284 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_000654_060 0.0883839832 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
10 Hb_008821_030 0.0928943672 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
11 Hb_000756_030 0.100741872 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_004586_050 0.104411796 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
13 Hb_004788_030 0.1045839629 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_000371_030 0.1069286914 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_022465_010 0.106993924 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
16 Hb_108744_010 0.1147451783 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_023712_020 0.1166984188 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
18 Hb_006197_010 0.1207752675 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
19 Hb_055877_010 0.1223252581 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_001410_040 0.12431462 - - Protein ABIL2, putative [Ricinus communis]

Gene co-expression network

sample Hb_001398_110 Hb_001398_110 Hb_000045_290 Hb_000045_290 Hb_001398_110--Hb_000045_290 Hb_001117_020 Hb_001117_020 Hb_001398_110--Hb_001117_020 Hb_004241_140 Hb_004241_140 Hb_001398_110--Hb_004241_140 Hb_019429_020 Hb_019429_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_005649_070 Hb_005649_070 Hb_001398_110--Hb_005649_070 Hb_000045_290--Hb_004241_140 Hb_000045_290--Hb_001117_020 Hb_000045_290--Hb_005649_070 Hb_000045_290--Hb_019429_020 Hb_008821_030 Hb_008821_030 Hb_000045_290--Hb_008821_030 Hb_001117_020--Hb_019429_020 Hb_001117_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_001117_020--Hb_004788_030 Hb_001117_020--Hb_004241_140 Hb_004241_140--Hb_005649_070 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_004241_140--Hb_019429_020 Hb_019429_020--Hb_008821_030 Hb_019429_020--Hb_004788_030 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010 Hb_004586_050 Hb_004586_050 Hb_000331_020--Hb_004586_050 Hb_000331_020--Hb_000045_290 Hb_000331_020--Hb_004241_140 Hb_000331_020--Hb_001117_020 Hb_152528_010 Hb_152528_010 Hb_000331_020--Hb_152528_010 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121594 0.646855 0.297416 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis