Hb_004586_050

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4586: 62117-62916
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026166mg
description hypothetical protein
nr
ID XP_012067990.1
description PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
swissprot
ID Q9LET0
description Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1
trembl
ID A0A067L2K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15880 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43508: 62018-62158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_050 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
2 Hb_000331_020 0.0714143744 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001398_110 0.104411796 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
4 Hb_000045_290 0.1087442781 - - -
5 Hb_001117_020 0.1090454479 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
6 Hb_019429_020 0.1153087277 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_004241_140 0.1181741538 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
8 Hb_000256_170 0.1241725274 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
9 Hb_006197_010 0.1247881921 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_000371_030 0.1282818588 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
11 Hb_002217_370 0.1291922739 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105643685 [Jatropha curcas]
12 Hb_008821_030 0.1315388807 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_002540_100 0.1332803482 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
14 Hb_005649_070 0.1341522048 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004788_030 0.1382584386 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
16 Hb_000654_060 0.142819609 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
17 Hb_152528_010 0.1443223733 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_022465_010 0.1478234766 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
19 Hb_023712_020 0.1481457023 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
20 Hb_000574_180 0.1522396014 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_050 Hb_004586_050 Hb_000331_020 Hb_000331_020 Hb_004586_050--Hb_000331_020 Hb_001398_110 Hb_001398_110 Hb_004586_050--Hb_001398_110 Hb_000045_290 Hb_000045_290 Hb_004586_050--Hb_000045_290 Hb_001117_020 Hb_001117_020 Hb_004586_050--Hb_001117_020 Hb_019429_020 Hb_019429_020 Hb_004586_050--Hb_019429_020 Hb_004241_140 Hb_004241_140 Hb_004586_050--Hb_004241_140 Hb_000331_020--Hb_001398_110 Hb_000331_020--Hb_000045_290 Hb_000331_020--Hb_004241_140 Hb_000331_020--Hb_001117_020 Hb_152528_010 Hb_152528_010 Hb_000331_020--Hb_152528_010 Hb_001398_110--Hb_000045_290 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_004241_140 Hb_001398_110--Hb_019429_020 Hb_005649_070 Hb_005649_070 Hb_001398_110--Hb_005649_070 Hb_000045_290--Hb_004241_140 Hb_000045_290--Hb_001117_020 Hb_000045_290--Hb_005649_070 Hb_000045_290--Hb_019429_020 Hb_008821_030 Hb_008821_030 Hb_000045_290--Hb_008821_030 Hb_001117_020--Hb_019429_020 Hb_001117_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_001117_020--Hb_004788_030 Hb_001117_020--Hb_004241_140 Hb_019429_020--Hb_008821_030 Hb_019429_020--Hb_004788_030 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010 Hb_004241_140--Hb_005649_070 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_004241_140--Hb_019429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.79573 3.81461 1.81431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0849588 0 0 0.0544325 0

CAGE analysis