Hb_004788_030

Information

Type -
Description -
Location Contig4788: 67540-69982
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_012066050.1
description PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
swissprot
ID Q5HZ09
description Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2
trembl
ID A0A067LFW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25205 PE=4 SV=1
Gene Ontology
ID GO:0046872
description chromosome condensation regulator family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004788_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
2 Hb_008821_030 0.0177433168 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
3 Hb_001410_040 0.0226557548 - - Protein ABIL2, putative [Ricinus communis]
4 Hb_009385_010 0.0301039514 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
5 Hb_006083_010 0.0337396056 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
6 Hb_019429_020 0.0478406953 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_007747_070 0.0508451859 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
8 Hb_021142_030 0.0554915491 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_001117_020 0.0580514882 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
10 Hb_003847_090 0.0610842861 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
11 Hb_007894_040 0.0822683863 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
12 Hb_055877_010 0.0845811993 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_000371_030 0.084734382 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
14 Hb_012146_010 0.0852809439 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
15 Hb_000277_030 0.0913682621 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000045_290 0.0930601718 - - -
17 Hb_001398_110 0.1045839629 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
18 Hb_054165_010 0.106940372 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_004241_140 0.1087319457 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
20 Hb_001002_020 0.1095348842 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004788_030 Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_004788_030--Hb_008821_030 Hb_001410_040 Hb_001410_040 Hb_004788_030--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_004788_030--Hb_009385_010 Hb_006083_010 Hb_006083_010 Hb_004788_030--Hb_006083_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_007747_070 Hb_007747_070 Hb_004788_030--Hb_007747_070 Hb_008821_030--Hb_001410_040 Hb_008821_030--Hb_009385_010 Hb_008821_030--Hb_007747_070 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020 Hb_001410_040--Hb_009385_010 Hb_021142_030 Hb_021142_030 Hb_001410_040--Hb_021142_030 Hb_001410_040--Hb_006083_010 Hb_001410_040--Hb_007747_070 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_006083_010 Hb_003847_090 Hb_003847_090 Hb_006083_010--Hb_003847_090 Hb_006083_010--Hb_008821_030 Hb_006083_010--Hb_021142_030 Hb_019429_020--Hb_001117_020 Hb_001398_110 Hb_001398_110 Hb_019429_020--Hb_001398_110 Hb_000045_290 Hb_000045_290 Hb_019429_020--Hb_000045_290 Hb_019429_020--Hb_006083_010 Hb_007894_040 Hb_007894_040 Hb_007747_070--Hb_007894_040 Hb_007747_070--Hb_021142_030 Hb_012146_010 Hb_012146_010 Hb_007747_070--Hb_012146_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0422734 0.113806 0.0515982 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis