Hb_003847_090

Information

Type -
Description -
Location Contig3847: 60719-62194
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04980g
description hypothetical protein
nr
ID XP_012092716.1
description PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
swissprot
ID P54769
description Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1
trembl
ID U5FR59
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04980g PE=3 SV=1
Gene Ontology
ID GO:0004058
description tyrosine decarboxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38725: 60473-60876 , PASA_asmbl_38726: 61077-61495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_090 0.0 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
2 Hb_006083_010 0.0435358459 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
3 Hb_000277_030 0.0585125373 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_004788_030 0.0610842861 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
5 Hb_001410_040 0.0662989812 - - Protein ABIL2, putative [Ricinus communis]
6 Hb_009385_010 0.0739239543 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
7 Hb_001002_020 0.0744716855 - - ATP binding protein, putative [Ricinus communis]
8 Hb_008821_030 0.0752681302 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_054165_010 0.0758064966 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_019429_020 0.0781038841 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_005928_010 0.080479412 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
12 Hb_021142_030 0.0898817909 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_136973_020 0.0903076359 - - -
14 Hb_000371_030 0.0924153224 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_001117_020 0.0945140281 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
16 Hb_007747_070 0.0997779605 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
17 Hb_000248_080 0.1033424776 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_023712_020 0.1149223431 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
19 Hb_064885_010 0.1156985887 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_172983_010 0.1164099796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003847_090 Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_003847_090--Hb_006083_010 Hb_000277_030 Hb_000277_030 Hb_003847_090--Hb_000277_030 Hb_004788_030 Hb_004788_030 Hb_003847_090--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_003847_090--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_003847_090--Hb_009385_010 Hb_001002_020 Hb_001002_020 Hb_003847_090--Hb_001002_020 Hb_006083_010--Hb_001410_040 Hb_006083_010--Hb_004788_030 Hb_006083_010--Hb_009385_010 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_006083_010--Hb_021142_030 Hb_005928_010 Hb_005928_010 Hb_000277_030--Hb_005928_010 Hb_000277_030--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_000277_030--Hb_054165_010 Hb_136973_020 Hb_136973_020 Hb_000277_030--Hb_136973_020 Hb_000277_030--Hb_006083_010 Hb_004788_030--Hb_008821_030 Hb_004788_030--Hb_001410_040 Hb_004788_030--Hb_009385_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_007747_070 Hb_007747_070 Hb_004788_030--Hb_007747_070 Hb_001410_040--Hb_009385_010 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_021142_030 Hb_001410_040--Hb_007747_070 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_008821_030 Hb_001002_020--Hb_054165_010 Hb_001002_020--Hb_005928_010 Hb_001002_020--Hb_136973_020 Hb_001002_020--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.56102 14.3154 8.2484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0299791 0.0523275

CAGE analysis